Gene annotation
Transcriptome id Sobic.006G235700.1
Synonym Sb06g030280
Functional annotation programmed cell death 2 C-terminal domain-containing protein, putative, expressed
UniProt C5Y8Y6
Pfam PF04194
Panther DB PTHR12298
NCBI CDD KOG2061; Uncharacterized MYND Zn-finger protein
KEGG Orthology K14801; pre-rRNA-processing protein TSR4
Gene Ontology GO:0005737; cytoplasm


Orthologs (automatic annotation)
TAIR AT5G64830 : programmed cell death 2 C-terminal domain-containing protein
RAP-DB (Rice) LOC_Os04g54820.1 : programmed cell death 2 C-terminal domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a057162
Brachypodium PNT61966 , KQJ84882
Barley HORVU2Hr1G115630.18 , HORVU2Hr1G115630.19 , HORVU2Hr1G115630.10 , HORVU2Hr1G115630.11 , HORVU2Hr1G115630.12 , HORVU2Hr1G115630.13 , HORVU2Hr1G115630.14 , HORVU2Hr1G115630.15 , HORVU2Hr1G115630.16 , HORVU2Hr1G115630.17 , HORVU2Hr1G115630.8 , HORVU2Hr1G115630.9 , HORVU2Hr1G115630.2 , HORVU2Hr1G115630.3 , HORVU2Hr1G115630.1 , HORVU2Hr1G115630.6 , HORVU2Hr1G115630.7 , HORVU2Hr1G115630.5
Wheat TraesCS2B02G553000 , TraesCS2D02G525200 , TraesCS2A02G523200 , TraesCS2A02G523200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G235700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
2 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
3 Sobic.001G017700 diphthamide biosynthesis protein, putative, expressed K17866: diphthamide biosynthesis protein 2
4 Sobic.003G287100 NADPH reductase, putative, expressed -
5 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
6 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
7 Sobic.007G184500 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
8 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
9 Sobic.003G279900 bacterial transferase hexapeptide domain containing protein, expressed K00677: UDP-N-acetylglucosamine acyltransferase
10 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
11 Sobic.007G077400 dehydrogenase, putative, expressed K07512: MECR, mitochondrial enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase
12 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
13 Sobic.004G333800 ribosomal RNA large subunit methyltransferase J, putative, expressed K14864: FTSJ1, tRNA (cytidine32/guanosine34-2'-O)-methyltransferase
14 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
15 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
16 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
17 Sobic.003G300300 la domain containing protein, expressed K15191: La-related protein 7
18 Sobic.003G178900 RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed -
19 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
20 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3


Gene co-expression network
sample Sobic006G235700 Sobic006G235700 Sobic006G135900 Sobic006G135900 Sobic006G235700--Sobic006G135900 Sobic009G138700 Sobic009G138700 Sobic006G235700--Sobic009G138700 Sobic001G017700 Sobic001G017700 Sobic006G235700--Sobic001G017700 Sobic003G287100 Sobic003G287100 Sobic006G235700--Sobic003G287100 Sobic006G200700 Sobic006G200700 Sobic006G235700--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic006G235700--Sobic009G143800 Sobic007G184500 Sobic007G184500 Sobic006G235700--Sobic007G184500 Sobic003G382500 Sobic003G382500 Sobic006G235700--Sobic003G382500 Sobic003G279900 Sobic003G279900 Sobic006G235700--Sobic003G279900 Sobic008G160000 Sobic008G160000 Sobic006G135900--Sobic008G160000 Sobic001G455800 Sobic001G455800 Sobic006G135900--Sobic001G455800 Sobic006G135900--Sobic006G235700 Sobic001G524400 Sobic001G524400 Sobic006G135900--Sobic001G524400 Sobic006G135900--Sobic009G138700 Sobic006G135900--Sobic007G184500 Sobic009G235000 Sobic009G235000 Sobic006G135900--Sobic009G235000 Sobic008G103300 Sobic008G103300 Sobic006G135900--Sobic008G103300 Sobic008G016100 Sobic008G016100 Sobic006G135900--Sobic008G016100 Sobic007G039400 Sobic007G039400 Sobic009G138700--Sobic007G039400 Sobic009G138700--Sobic008G160000 Sobic001G259000 Sobic001G259000 Sobic009G138700--Sobic001G259000 Sobic009G138700--Sobic003G382500 Sobic002G406600 Sobic002G406600 Sobic009G138700--Sobic002G406600 Sobic003G178900 Sobic003G178900 Sobic009G138700--Sobic003G178900 Sobic009G138700--Sobic006G235700 Sobic009G138700--Sobic006G135900 Sobic009G138700--Sobic009G143800 Sobic001G145400 Sobic001G145400 Sobic001G017700--Sobic001G145400 Sobic006G208500 Sobic006G208500 Sobic001G017700--Sobic006G208500 Sobic006G086600 Sobic006G086600 Sobic001G017700--Sobic006G086600 Sobic006G136400 Sobic006G136400 Sobic001G017700--Sobic006G136400 Sobic003G057700 Sobic003G057700 Sobic001G017700--Sobic003G057700 Sobic001G017700--Sobic003G287100 Sobic008G009600 Sobic008G009600 Sobic001G017700--Sobic008G009600 Sobic009G101200 Sobic009G101200 Sobic001G017700--Sobic009G101200 Sobic003G300300 Sobic003G300300 Sobic001G017700--Sobic003G300300 Sobic004G339100 Sobic004G339100 Sobic003G287100--Sobic004G339100 Sobic003G287100--Sobic001G017700 Sobic001G201500 Sobic001G201500 Sobic003G287100--Sobic001G201500 Sobic001G201400 Sobic001G201400 Sobic003G287100--Sobic001G201400 Sobic003G287100--Sobic007G184500 Sobic003G287100--Sobic003G382500 Sobic007G077400 Sobic007G077400 Sobic003G287100--Sobic007G077400 Sobic006G114500 Sobic006G114500 Sobic003G287100--Sobic006G114500 Sobic003G287100--Sobic006G208500 Sobic004G353000 Sobic004G353000 Sobic006G200700--Sobic004G353000 Sobic006G200700--Sobic006G208500 Sobic008G014500 Sobic008G014500 Sobic006G200700--Sobic008G014500 Sobic010G116600 Sobic010G116600 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic001G522600 Sobic001G522600 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic004G277200 Sobic004G277200 Sobic006G200700--Sobic004G277200 Sobic009G044800 Sobic009G044800 Sobic006G200700--Sobic009G044800 Sobic009G143800--Sobic004G353000 Sobic009G143800--Sobic001G259000 Sobic004G332400 Sobic004G332400 Sobic009G143800--Sobic004G332400 Sobic009G143800--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic009G143800--Sobic010G118000 Sobic009G143800--Sobic006G200700 Sobic008G147200 Sobic008G147200 Sobic009G143800--Sobic008G147200 Sobic008G131000 Sobic008G131000 Sobic009G143800--Sobic008G131000 Sobic001G291800 Sobic001G291800 Sobic009G143800--Sobic001G291800 Sobic001G360200 Sobic001G360200 Sobic007G184500--Sobic001G360200 Sobic001G033500 Sobic001G033500 Sobic007G184500--Sobic001G033500 Sobic007G184500--Sobic007G077400 Sobic006G044600 Sobic006G044600 Sobic007G184500--Sobic006G044600 Sobic009G058500 Sobic009G058500 Sobic007G184500--Sobic009G058500 Sobic006G278700 Sobic006G278700 Sobic007G184500--Sobic006G278700 Sobic007G184500--Sobic004G353000 Sobic004G178200 Sobic004G178200 Sobic007G184500--Sobic004G178200 Sobic010G073100 Sobic010G073100 Sobic007G184500--Sobic010G073100 Sobic003G382500--Sobic009G138700 Sobic008G098600 Sobic008G098600 Sobic003G382500--Sobic008G098600 Sobic006G084000 Sobic006G084000 Sobic003G382500--Sobic006G084000 Sobic003G407600 Sobic003G407600 Sobic003G382500--Sobic003G407600 Sobic003G382500--Sobic001G017700 Sobic003G382500--Sobic003G287100 Sobic007G112600 Sobic007G112600 Sobic003G382500--Sobic007G112600 Sobic010G007100 Sobic010G007100 Sobic003G382500--Sobic010G007100 Sobic003G382500--Sobic008G009600 Sobic003G279900--Sobic004G277200 Sobic004G135400 Sobic004G135400 Sobic003G279900--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic003G279900--Sobic005G003300 Sobic007G060201 Sobic007G060201 Sobic003G279900--Sobic007G060201 Sobic002G430000 Sobic002G430000 Sobic003G279900--Sobic002G430000 Sobic008G099800 Sobic008G099800 Sobic003G279900--Sobic008G099800 Sobic001G281100 Sobic001G281100 Sobic003G279900--Sobic001G281100 Sobic001G534800 Sobic001G534800 Sobic003G279900--Sobic001G534800 Sobic010G232600 Sobic010G232600 Sobic003G279900--Sobic010G232600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.