Gene annotation
Transcriptome id Sobic.001G524400.1
Synonym Sb01g048840
Functional annotation G-patch domain containing protein, expressed
UniProt C5X019
Pfam PF01585
Panther DB PTHR23149 PTHR23149:SF9
NCBI CDD KOG2809; Telomerase elongation inhibitor/RNA maturation protein PINX1
KEGG Orthology K11135; Pin2-interacting protein X1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G63980 : D111/G-patch domain-containing protein
RAP-DB (Rice) LOC_Os03g03390.1 : G-patch domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000335
Brachypodium KQK23900
Barley HORVU4Hr1G083360.2 , HORVU4Hr1G083360.3
Wheat TraesCS5A02G494100 , TraesCS5A02G494100 , TraesCS5A02G494100 , TraesCS4B02G318200 , TraesCS4B02G318200 , TraesCS4B02G318200 , TraesCS4D02G314500 , TraesCS4D02G314500
Populus -


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cDNA sequences
Sobic.001G524400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
2 Sobic.010G203300 paxneb-related protein, putative, expressed K11375: elongator complex protein 4
3 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
4 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
5 Sobic.003G300300 la domain containing protein, expressed K15191: La-related protein 7
6 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
7 Sobic.003G188500 RWD domain containing protein, expressed -
8 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
9 Sobic.004G346100 expressed protein -
10 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
11 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
12 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
13 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
14 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
15 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
16 Sobic.001G416700 arginine biosynthesis bifunctional protein argJ 1, putative, expressed K00620: glutamate N-acetyltransferase / amino-acid N-acetyltransferase
17 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
18 Sobic.004G041200 expressed protein -
19 Sobic.007G143500 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
20 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6


Gene co-expression network
sample Sobic001G524400 Sobic001G524400 Sobic004G307500 Sobic004G307500 Sobic001G524400--Sobic004G307500 Sobic010G203300 Sobic010G203300 Sobic001G524400--Sobic010G203300 Sobic006G135900 Sobic006G135900 Sobic001G524400--Sobic006G135900 Sobic007G039400 Sobic007G039400 Sobic001G524400--Sobic007G039400 Sobic003G300300 Sobic003G300300 Sobic001G524400--Sobic003G300300 Sobic008G103300 Sobic008G103300 Sobic001G524400--Sobic008G103300 Sobic003G188500 Sobic003G188500 Sobic001G524400--Sobic003G188500 Sobic009G138700 Sobic009G138700 Sobic001G524400--Sobic009G138700 Sobic004G346100 Sobic004G346100 Sobic001G524400--Sobic004G346100 Sobic001G168900 Sobic001G168900 Sobic004G307500--Sobic001G168900 Sobic004G307500--Sobic001G524400 Sobic002G077900 Sobic002G077900 Sobic004G307500--Sobic002G077900 Sobic002G005000 Sobic002G005000 Sobic004G307500--Sobic002G005000 Sobic009G258400 Sobic009G258400 Sobic004G307500--Sobic009G258400 Sobic001G291800 Sobic001G291800 Sobic004G307500--Sobic001G291800 Sobic007G143500 Sobic007G143500 Sobic004G307500--Sobic007G143500 Sobic001G007800 Sobic001G007800 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300 Sobic010G203300--Sobic001G524400 Sobic010G203300--Sobic004G307500 Sobic009G058500 Sobic009G058500 Sobic010G203300--Sobic009G058500 Sobic010G203300--Sobic009G138700 Sobic001G360200 Sobic001G360200 Sobic010G203300--Sobic001G360200 Sobic001G259000 Sobic001G259000 Sobic010G203300--Sobic001G259000 Sobic001G512300 Sobic001G512300 Sobic010G203300--Sobic001G512300 Sobic010G247400 Sobic010G247400 Sobic010G203300--Sobic010G247400 Sobic009G194801 Sobic009G194801 Sobic010G203300--Sobic009G194801 Sobic008G160000 Sobic008G160000 Sobic006G135900--Sobic008G160000 Sobic001G455800 Sobic001G455800 Sobic006G135900--Sobic001G455800 Sobic006G235700 Sobic006G235700 Sobic006G135900--Sobic006G235700 Sobic006G135900--Sobic001G524400 Sobic006G135900--Sobic009G138700 Sobic007G184500 Sobic007G184500 Sobic006G135900--Sobic007G184500 Sobic009G235000 Sobic009G235000 Sobic006G135900--Sobic009G235000 Sobic006G135900--Sobic008G103300 Sobic008G016100 Sobic008G016100 Sobic006G135900--Sobic008G016100 Sobic007G039400--Sobic001G291800 Sobic007G039400--Sobic009G138700 Sobic007G039400--Sobic001G259000 Sobic001G145400 Sobic001G145400 Sobic007G039400--Sobic001G145400 Sobic004G340400 Sobic004G340400 Sobic007G039400--Sobic004G340400 Sobic010G007100 Sobic010G007100 Sobic007G039400--Sobic010G007100 Sobic004G353000 Sobic004G353000 Sobic007G039400--Sobic004G353000 Sobic010G176500 Sobic010G176500 Sobic007G039400--Sobic010G176500 Sobic004G033600 Sobic004G033600 Sobic007G039400--Sobic004G033600 Sobic001G017700 Sobic001G017700 Sobic003G300300--Sobic001G017700 Sobic006G083400 Sobic006G083400 Sobic003G300300--Sobic006G083400 Sobic010G034000 Sobic010G034000 Sobic003G300300--Sobic010G034000 Sobic003G300300--Sobic001G524400 Sobic004G246100 Sobic004G246100 Sobic003G300300--Sobic004G246100 Sobic007G041500 Sobic007G041500 Sobic003G300300--Sobic007G041500 Sobic009G137100 Sobic009G137100 Sobic003G300300--Sobic009G137100 Sobic010G166400 Sobic010G166400 Sobic003G300300--Sobic010G166400 Sobic003G300300--Sobic001G145400 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic002G371700 Sobic002G371700 Sobic008G103300--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic008G103300--Sobic003G046300 Sobic003G132000 Sobic003G132000 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic001G114500 Sobic001G114500 Sobic008G103300--Sobic001G114500 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic001G509500 Sobic001G509500 Sobic003G188500--Sobic001G509500 Sobic003G188500--Sobic001G524400 Sobic008G014500 Sobic008G014500 Sobic003G188500--Sobic008G014500 Sobic006G182200 Sobic006G182200 Sobic003G188500--Sobic006G182200 Sobic007G207200 Sobic007G207200 Sobic003G188500--Sobic007G207200 Sobic005G157100 Sobic005G157100 Sobic003G188500--Sobic005G157100 Sobic002G058400 Sobic002G058400 Sobic003G188500--Sobic002G058400 Sobic003G188500--Sobic010G166400 Sobic003G221600 Sobic003G221600 Sobic003G188500--Sobic003G221600 Sobic009G138700--Sobic007G039400 Sobic009G138700--Sobic008G160000 Sobic009G138700--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic009G138700--Sobic003G382500 Sobic002G406600 Sobic002G406600 Sobic009G138700--Sobic002G406600 Sobic003G178900 Sobic003G178900 Sobic009G138700--Sobic003G178900 Sobic009G138700--Sobic006G235700 Sobic009G138700--Sobic006G135900 Sobic009G143800 Sobic009G143800 Sobic009G138700--Sobic009G143800 Sobic004G346100--Sobic001G168900 Sobic004G346100--Sobic009G058500 Sobic009G036200 Sobic009G036200 Sobic004G346100--Sobic009G036200 Sobic003G417900 Sobic003G417900 Sobic004G346100--Sobic003G417900 Sobic004G346100--Sobic002G077900 Sobic004G036300 Sobic004G036300 Sobic004G346100--Sobic004G036300 Sobic004G346100--Sobic009G143800 Sobic004G346100--Sobic009G258400 Sobic004G346100--Sobic004G307500
Octagon: transcription factors


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