Gene annotation
Transcriptome id Sobic.010G203300.1
Synonym ELO1, Sb10g025080
Functional annotation paxneb-related protein, putative, expressed
UniProt C5Z6M5
Pfam PF05625
Panther DB PTHR12896 PTHR12896:SF1
NCBI CDD KOG3949; RNA polymerase II elongator complex, subunit ELP4
KEGG Orthology K11375; elongator complex protein 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G11220 : Paxneb protein-related
RAP-DB (Rice) LOC_Os06g43280.1 : paxneb-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a051417
Brachypodium -
Barley HORVU7Hr1G116180.1 , HORVU7Hr1G116180.2 , HORVU7Hr1G116180.3 , HORVU7Hr1G116180.4 , HORVU7Hr1G116180.5 , HORVU7Hr1G116180.6 , HORVU7Hr1G116180.7
Wheat TraesCS7B02G439900 , TraesCS7A02G522900 , TraesCS7A02G522900 , TraesCS7D02G512100 , TraesCS7D02G512100
Populus -


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cDNA sequences
Sobic.010G203300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
2 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
3 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
4 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
5 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
6 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
7 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
8 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
9 Sobic.009G194801 - -
10 Sobic.003G178900 RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed -
11 Sobic.004G346100 expressed protein -
12 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
13 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
14 Sobic.009G083200 coiled-coil domain-containing protein 25, putative, expressed -
15 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
16 Sobic.004G348300 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
17 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
18 Sobic.002G192200 proteasome subunit, putative, expressed -
19 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
20 Sobic.003G074400 expressed protein -


Gene co-expression network
sample Sobic010G203300 Sobic010G203300 Sobic001G524400 Sobic001G524400 Sobic010G203300--Sobic001G524400 Sobic004G307500 Sobic004G307500 Sobic010G203300--Sobic004G307500 Sobic009G058500 Sobic009G058500 Sobic010G203300--Sobic009G058500 Sobic009G138700 Sobic009G138700 Sobic010G203300--Sobic009G138700 Sobic001G360200 Sobic001G360200 Sobic010G203300--Sobic001G360200 Sobic001G259000 Sobic001G259000 Sobic010G203300--Sobic001G259000 Sobic001G512300 Sobic001G512300 Sobic010G203300--Sobic001G512300 Sobic010G247400 Sobic010G247400 Sobic010G203300--Sobic010G247400 Sobic009G194801 Sobic009G194801 Sobic010G203300--Sobic009G194801 Sobic001G524400--Sobic004G307500 Sobic001G524400--Sobic010G203300 Sobic006G135900 Sobic006G135900 Sobic001G524400--Sobic006G135900 Sobic007G039400 Sobic007G039400 Sobic001G524400--Sobic007G039400 Sobic003G300300 Sobic003G300300 Sobic001G524400--Sobic003G300300 Sobic008G103300 Sobic008G103300 Sobic001G524400--Sobic008G103300 Sobic003G188500 Sobic003G188500 Sobic001G524400--Sobic003G188500 Sobic001G524400--Sobic009G138700 Sobic004G346100 Sobic004G346100 Sobic001G524400--Sobic004G346100 Sobic001G168900 Sobic001G168900 Sobic004G307500--Sobic001G168900 Sobic004G307500--Sobic001G524400 Sobic002G077900 Sobic002G077900 Sobic004G307500--Sobic002G077900 Sobic002G005000 Sobic002G005000 Sobic004G307500--Sobic002G005000 Sobic009G258400 Sobic009G258400 Sobic004G307500--Sobic009G258400 Sobic001G291800 Sobic001G291800 Sobic004G307500--Sobic001G291800 Sobic007G143500 Sobic007G143500 Sobic004G307500--Sobic007G143500 Sobic001G007800 Sobic001G007800 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300 Sobic009G058500--Sobic001G360200 Sobic007G184500 Sobic007G184500 Sobic009G058500--Sobic007G184500 Sobic010G018700 Sobic010G018700 Sobic009G058500--Sobic010G018700 Sobic009G058500--Sobic002G077900 Sobic003G439800 Sobic003G439800 Sobic009G058500--Sobic003G439800 Sobic003G074400 Sobic003G074400 Sobic009G058500--Sobic003G074400 Sobic006G278700 Sobic006G278700 Sobic009G058500--Sobic006G278700 Sobic006G044600 Sobic006G044600 Sobic009G058500--Sobic006G044600 Sobic009G058500--Sobic004G346100 Sobic009G138700--Sobic007G039400 Sobic008G160000 Sobic008G160000 Sobic009G138700--Sobic008G160000 Sobic009G138700--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic009G138700--Sobic003G382500 Sobic002G406600 Sobic002G406600 Sobic009G138700--Sobic002G406600 Sobic003G178900 Sobic003G178900 Sobic009G138700--Sobic003G178900 Sobic006G235700 Sobic006G235700 Sobic009G138700--Sobic006G235700 Sobic009G138700--Sobic006G135900 Sobic009G143800 Sobic009G143800 Sobic009G138700--Sobic009G143800 Sobic001G360200--Sobic006G278700 Sobic004G066200 Sobic004G066200 Sobic001G360200--Sobic004G066200 Sobic001G360200--Sobic007G184500 Sobic006G252700 Sobic006G252700 Sobic001G360200--Sobic006G252700 Sobic002G300700 Sobic002G300700 Sobic001G360200--Sobic002G300700 Sobic001G143500 Sobic001G143500 Sobic001G360200--Sobic001G143500 Sobic001G360200--Sobic009G058500 Sobic009G228700 Sobic009G228700 Sobic001G360200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic001G360200--Sobic006G101700 Sobic001G259000--Sobic009G143800 Sobic004G156800 Sobic004G156800 Sobic001G259000--Sobic004G156800 Sobic006G270600 Sobic006G270600 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G145400 Sobic001G145400 Sobic001G259000--Sobic001G145400 Sobic001G259000--Sobic008G160000 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic001G259000--Sobic009G138700 Sobic001G091300 Sobic001G091300 Sobic001G512300--Sobic001G091300 Sobic001G512300--Sobic006G101700 Sobic002G281300 Sobic002G281300 Sobic001G512300--Sobic002G281300 Sobic001G085100 Sobic001G085100 Sobic001G512300--Sobic001G085100 Sobic009G207000 Sobic009G207000 Sobic001G512300--Sobic009G207000 Sobic001G512300--Sobic001G360200 Sobic009G123600 Sobic009G123600 Sobic001G512300--Sobic009G123600 Sobic001G512300--Sobic004G066200 Sobic003G007500 Sobic003G007500 Sobic001G512300--Sobic003G007500 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic010G247400--Sobic001G259000 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic003G407600 Sobic003G407600 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic006G258900 Sobic006G258900 Sobic009G194801--Sobic006G258900 Sobic010G027600 Sobic010G027600 Sobic009G194801--Sobic010G027600 Sobic007G115900 Sobic007G115900 Sobic009G194801--Sobic007G115900 Sobic001G043900 Sobic001G043900 Sobic009G194801--Sobic001G043900 Sobic002G347000 Sobic002G347000 Sobic009G194801--Sobic002G347000 Sobic003G417900 Sobic003G417900 Sobic009G194801--Sobic003G417900 Sobic002G306400 Sobic002G306400 Sobic009G194801--Sobic002G306400 Sobic009G194801--Sobic009G058500 Sobic009G194801--Sobic003G178900
Octagon: transcription factors


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