Gene annotation
Transcriptome id Sobic.004G307500.1
Synonym Sb04g034020
Functional annotation phenylalanyl-tRNA synthetase, putative, expressed
UniProt A0A194YSE7
Pfam PF01409
Panther DB PTHR11538 PTHR11538:SF40
NCBI CDD -
KEGG Orthology K01889; FARSA, phenylalanyl-tRNA synthetase alpha chain
Gene Ontology GO:0005737; cytoplasm GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000049tRNA binding


Orthologs (automatic annotation)
TAIR AT4G39280 : phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
RAP-DB (Rice) LOC_Os10g26130.1 : phenylalanyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a022205
Brachypodium KQK01774
Barley HORVU5Hr1G061970.8 , HORVU5Hr1G061970.9 , HORVU5Hr1G061970.6 , HORVU5Hr1G061970.7 , HORVU5Hr1G061970.4 , HORVU5Hr1G061970.5 , HORVU5Hr1G061970.2 , HORVU5Hr1G061970.3 , HORVU5Hr1G061970.1 , HORVU5Hr1G061970.14 , HORVU5Hr1G061970.15 , HORVU5Hr1G061970.16 , HORVU5Hr1G061970.17 , HORVU5Hr1G061970.10 , HORVU5Hr1G061970.11 , HORVU5Hr1G061970.12 , HORVU5Hr1G061970.13 , HORVU5Hr1G061970.18 , HORVU5Hr1G061970.19 , HORVU5Hr1G061970.20 , HORVU6Hr1G078780.4 , HORVU6Hr1G078780.5 , HORVU6Hr1G078780.1 , HORVU6Hr1G078780.2 , HORVU6Hr1G078780.3
Wheat TraesCS6B02G352300 , TraesCS6D02G301200 , TraesCS5B02G209400
Populus PNT41409 , PNT20859 , PNT20860 , PNT20861


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cDNA sequences
Sobic.004G307500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
2 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
3 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
4 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
5 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
6 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
7 Sobic.007G143500 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
8 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
9 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
10 Sobic.001G023800 expressed protein -
11 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
12 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
13 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
14 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
15 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
16 Sobic.010G203300 paxneb-related protein, putative, expressed K11375: elongator complex protein 4
17 Sobic.007G187600 pentatricopeptide, putative, expressed -
18 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
19 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
20 Sobic.004G346100 expressed protein -


Gene co-expression network
sample Sobic004G307500 Sobic004G307500 Sobic001G168900 Sobic001G168900 Sobic004G307500--Sobic001G168900 Sobic001G524400 Sobic001G524400 Sobic004G307500--Sobic001G524400 Sobic002G077900 Sobic002G077900 Sobic004G307500--Sobic002G077900 Sobic002G005000 Sobic002G005000 Sobic004G307500--Sobic002G005000 Sobic009G258400 Sobic009G258400 Sobic004G307500--Sobic009G258400 Sobic001G291800 Sobic001G291800 Sobic004G307500--Sobic001G291800 Sobic007G143500 Sobic007G143500 Sobic004G307500--Sobic007G143500 Sobic001G007800 Sobic001G007800 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300 Sobic007G187600 Sobic007G187600 Sobic001G168900--Sobic007G187600 Sobic001G168900--Sobic004G307500 Sobic001G168900--Sobic002G077900 Sobic001G168900--Sobic001G291800 Sobic001G168900--Sobic009G258400 Sobic001G042200 Sobic001G042200 Sobic001G168900--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic003G132000 Sobic003G132000 Sobic001G168900--Sobic003G132000 Sobic001G524400--Sobic004G307500 Sobic010G203300 Sobic010G203300 Sobic001G524400--Sobic010G203300 Sobic006G135900 Sobic006G135900 Sobic001G524400--Sobic006G135900 Sobic007G039400 Sobic007G039400 Sobic001G524400--Sobic007G039400 Sobic003G300300 Sobic003G300300 Sobic001G524400--Sobic003G300300 Sobic008G103300 Sobic008G103300 Sobic001G524400--Sobic008G103300 Sobic003G188500 Sobic003G188500 Sobic001G524400--Sobic003G188500 Sobic009G138700 Sobic009G138700 Sobic001G524400--Sobic009G138700 Sobic001G524400--Sobic004G346100 Sobic002G077900--Sobic001G168900 Sobic001G226000 Sobic001G226000 Sobic002G077900--Sobic001G226000 Sobic001G370300 Sobic001G370300 Sobic002G077900--Sobic001G370300 Sobic003G420700 Sobic003G420700 Sobic002G077900--Sobic003G420700 Sobic002G077900--Sobic004G307500 Sobic009G058500 Sobic009G058500 Sobic002G077900--Sobic009G058500 Sobic002G077900--Sobic009G258400 Sobic006G044600 Sobic006G044600 Sobic002G077900--Sobic006G044600 Sobic010G193800 Sobic010G193800 Sobic002G077900--Sobic010G193800 Sobic001G373000 Sobic001G373000 Sobic002G005000--Sobic001G373000 Sobic010G186600 Sobic010G186600 Sobic002G005000--Sobic010G186600 Sobic002G005000--Sobic001G291800 Sobic001G023800 Sobic001G023800 Sobic002G005000--Sobic001G023800 Sobic001G052400 Sobic001G052400 Sobic002G005000--Sobic001G052400 Sobic002G005000--Sobic004G307500 Sobic008G147200 Sobic008G147200 Sobic002G005000--Sobic008G147200 Sobic004G340400 Sobic004G340400 Sobic002G005000--Sobic004G340400 Sobic001G013300 Sobic001G013300 Sobic002G005000--Sobic001G013300 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic001G114500 Sobic001G114500 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic009G258400--Sobic002G077900 Sobic009G258400--Sobic001G291800 Sobic009G258400--Sobic003G132000 Sobic001G507400 Sobic001G507400 Sobic009G258400--Sobic001G507400 Sobic001G291800--Sobic004G340400 Sobic001G145400 Sobic001G145400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic001G291800--Sobic008G147200 Sobic001G291800--Sobic007G039400 Sobic001G291800--Sobic001G168900 Sobic001G334100 Sobic001G334100 Sobic007G143500--Sobic001G334100 Sobic007G143500--Sobic004G307500 Sobic007G143500--Sobic001G168900 Sobic007G143500--Sobic001G007800 Sobic001G416700 Sobic001G416700 Sobic007G143500--Sobic001G416700 Sobic005G178700 Sobic005G178700 Sobic007G143500--Sobic005G178700 Sobic008G098600 Sobic008G098600 Sobic007G143500--Sobic008G098600 Sobic007G143500--Sobic002G005000 Sobic004G235500 Sobic004G235500 Sobic007G143500--Sobic004G235500 Sobic002G150700 Sobic002G150700 Sobic001G007800--Sobic002G150700 Sobic001G007800--Sobic004G307500 Sobic001G007800--Sobic004G340400 Sobic001G007800--Sobic007G143500 Sobic001G007800--Sobic001G334100 Sobic009G235000 Sobic009G235000 Sobic001G007800--Sobic009G235000 Sobic006G193300 Sobic006G193300 Sobic001G007800--Sobic006G193300 Sobic008G160000 Sobic008G160000 Sobic001G007800--Sobic008G160000 Sobic007G089800 Sobic007G089800 Sobic001G007800--Sobic007G089800 Sobic004G156800 Sobic004G156800 Sobic001G527300--Sobic004G156800 Sobic001G527300--Sobic008G147200 Sobic009G143800 Sobic009G143800 Sobic001G527300--Sobic009G143800 Sobic001G527300--Sobic001G291800 Sobic010G247400 Sobic010G247400 Sobic001G527300--Sobic010G247400 Sobic010G007100 Sobic010G007100 Sobic001G527300--Sobic010G007100 Sobic006G226300 Sobic006G226300 Sobic001G527300--Sobic006G226300 Sobic001G527300--Sobic001G168900 Sobic001G527300--Sobic004G340400
Octagon: transcription factors


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