Gene annotation
Transcriptome id Sobic.001G007800.1
Synonym Sb01g000780
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5WS04
Pfam PF00400 PF04158
Panther DB PTHR22851 PTHR22851:SF0
NCBI CDD -
KEGG Orthology K11806; DCAF13, DDB1- and CUL4-associated factor 13
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G28450 : nucleotide binding;protein binding
RAP-DB (Rice) LOC_Os01g13730.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009088
Brachypodium KQK03502 , KQJ84559
Barley HORVU3Hr1G032420.12 , HORVU3Hr1G032420.14 , HORVU3Hr1G032420.17 , HORVU3Hr1G032420.7 , HORVU3Hr1G032420.8 , HORVU3Hr1G032420.9 , HORVU3Hr1G032420.10 , HORVU3Hr1G032420.13 , HORVU3Hr1G032420.15 , HORVU3Hr1G032420.11
Wheat TraesCS3B02G191500 , TraesCS3A02G160900 , TraesCS3D02G168100
Populus -


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cDNA sequences
Sobic.001G007800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
2 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
3 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
4 Sobic.007G143500 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
5 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
6 Sobic.009G235000 WD domain, G-beta repeat domain containing protein, expressed K14829: pre-rRNA-processing protein IPI3
7 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
8 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
10 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
11 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
12 Sobic.004G272400 AAA-type ATPase family protein, putative, expressed K17681: ATPase family AAA domain-containing protein 3A/B
13 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
14 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
15 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
16 Sobic.010G216300 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
17 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
18 Sobic.001G416700 arginine biosynthesis bifunctional protein argJ 1, putative, expressed K00620: glutamate N-acetyltransferase / amino-acid N-acetyltransferase
19 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
20 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -


Gene co-expression network
sample Sobic001G007800 Sobic001G007800 Sobic002G150700 Sobic002G150700 Sobic001G007800--Sobic002G150700 Sobic004G307500 Sobic004G307500 Sobic001G007800--Sobic004G307500 Sobic004G340400 Sobic004G340400 Sobic001G007800--Sobic004G340400 Sobic007G143500 Sobic007G143500 Sobic001G007800--Sobic007G143500 Sobic001G334100 Sobic001G334100 Sobic001G007800--Sobic001G334100 Sobic009G235000 Sobic009G235000 Sobic001G007800--Sobic009G235000 Sobic006G193300 Sobic006G193300 Sobic001G007800--Sobic006G193300 Sobic008G160000 Sobic008G160000 Sobic001G007800--Sobic008G160000 Sobic007G089800 Sobic007G089800 Sobic001G007800--Sobic007G089800 Sobic002G408900 Sobic002G408900 Sobic002G150700--Sobic002G408900 Sobic006G002800 Sobic006G002800 Sobic002G150700--Sobic006G002800 Sobic001G455800 Sobic001G455800 Sobic002G150700--Sobic001G455800 Sobic003G146600 Sobic003G146600 Sobic002G150700--Sobic003G146600 Sobic001G099900 Sobic001G099900 Sobic002G150700--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic002G150700--Sobic004G208500 Sobic002G398700 Sobic002G398700 Sobic002G150700--Sobic002G398700 Sobic001G145400 Sobic001G145400 Sobic002G150700--Sobic001G145400 Sobic003G304400 Sobic003G304400 Sobic002G150700--Sobic003G304400 Sobic001G168900 Sobic001G168900 Sobic004G307500--Sobic001G168900 Sobic001G524400 Sobic001G524400 Sobic004G307500--Sobic001G524400 Sobic002G077900 Sobic002G077900 Sobic004G307500--Sobic002G077900 Sobic002G005000 Sobic002G005000 Sobic004G307500--Sobic002G005000 Sobic009G258400 Sobic009G258400 Sobic004G307500--Sobic009G258400 Sobic001G291800 Sobic001G291800 Sobic004G307500--Sobic001G291800 Sobic004G307500--Sobic007G143500 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300 Sobic004G340400--Sobic001G145400 Sobic004G340400--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic004G340400--Sobic004G320500 Sobic010G007100 Sobic010G007100 Sobic004G340400--Sobic010G007100 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic007G143500--Sobic001G334100 Sobic007G143500--Sobic004G307500 Sobic007G143500--Sobic001G168900 Sobic007G143500--Sobic001G007800 Sobic001G416700 Sobic001G416700 Sobic007G143500--Sobic001G416700 Sobic005G178700 Sobic005G178700 Sobic007G143500--Sobic005G178700 Sobic008G098600 Sobic008G098600 Sobic007G143500--Sobic008G098600 Sobic007G143500--Sobic002G005000 Sobic004G235500 Sobic004G235500 Sobic007G143500--Sobic004G235500 Sobic001G334100--Sobic007G143500 Sobic003G184400 Sobic003G184400 Sobic001G334100--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic001G334100--Sobic005G199200 Sobic003G259600 Sobic003G259600 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic006G180700 Sobic006G180700 Sobic001G334100--Sobic006G180700 Sobic004G067400 Sobic004G067400 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic004G252000 Sobic004G252000 Sobic009G235000--Sobic004G252000 Sobic009G235000--Sobic001G007800 Sobic006G135900 Sobic006G135900 Sobic009G235000--Sobic006G135900 Sobic009G235000--Sobic008G160000 Sobic009G249800 Sobic009G249800 Sobic009G235000--Sobic009G249800 Sobic006G142400 Sobic006G142400 Sobic009G235000--Sobic006G142400 Sobic001G017700 Sobic001G017700 Sobic009G235000--Sobic001G017700 Sobic002G423500 Sobic002G423500 Sobic009G235000--Sobic002G423500 Sobic001G251600 Sobic001G251600 Sobic009G235000--Sobic001G251600 Sobic006G193300--Sobic004G340400 Sobic001G429600 Sobic001G429600 Sobic006G193300--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic006G193300--Sobic001G461300 Sobic006G193300--Sobic002G408900 Sobic008G049100 Sobic008G049100 Sobic006G193300--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic006G193300--Sobic009G246500 Sobic006G125900 Sobic006G125900 Sobic006G193300--Sobic006G125900 Sobic006G193300--Sobic001G401500 Sobic003G199300 Sobic003G199300 Sobic006G193300--Sobic003G199300 Sobic008G160000--Sobic004G340400 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic008G160000--Sobic001G145400 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic001G373000 Sobic001G373000 Sobic007G089800--Sobic001G373000 Sobic007G089800--Sobic006G002800 Sobic001G408600 Sobic001G408600 Sobic007G089800--Sobic001G408600 Sobic004G315500 Sobic004G315500 Sobic007G089800--Sobic004G315500 Sobic010G188000 Sobic010G188000 Sobic007G089800--Sobic010G188000 Sobic007G089800--Sobic001G461300 Sobic007G089800--Sobic006G193300 Sobic010G205900 Sobic010G205900 Sobic007G089800--Sobic010G205900 Sobic010G186600 Sobic010G186600 Sobic007G089800--Sobic010G186600
Octagon: transcription factors


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