Gene annotation
Transcriptome id Sobic.004G272400.1
Synonym Sb04g030980
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt C5Y0F6
Pfam PF00004 PF12037
Panther DB PTHR23075 PTHR23075:SF0
NCBI CDD -
KEGG Orthology K17681; ATPase family AAA domain-containing protein 3A/B
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G16930 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os02g46990.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a021646 , Zm00025a032404
Brachypodium KQK00873
Barley HORVU0Hr1G032110.1 , HORVU0Hr1G032110.3 , HORVU6Hr1G067630.4 , HORVU6Hr1G067630.1 , HORVU6Hr1G067630.2 , HORVU6Hr1G067630.3 , HORVU0Hr1G016640.4 , HORVU0Hr1G016640.3 , HORVU0Hr1G016640.2 , HORVU0Hr1G016640.1 , HORVU0Hr1G032110.4 , HORVU0Hr1G032110.2
Wheat TraesCS6A02G266900 , TraesCS6D02G247700 , TraesCS6B02G294300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
2 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
3 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
4 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
5 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
6 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
7 Sobic.006G041100 nuclear transport factor 2, putative, expressed -
8 Sobic.003G235700 single-stranded DNA-binding protein, putative, expressed K03111: single-strand DNA-binding protein
9 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
10 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
11 Sobic.009G235000 WD domain, G-beta repeat domain containing protein, expressed K14829: pre-rRNA-processing protein IPI3
12 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
13 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
14 Sobic.006G225400 zinc finger protein, putative, expressed -
15 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
16 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
17 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
18 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
19 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
20 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6


Gene co-expression network
sample Sobic004G272400 Sobic004G272400 Sobic001G007800 Sobic001G007800 Sobic004G272400--Sobic001G007800 Sobic006G251600 Sobic006G251600 Sobic004G272400--Sobic006G251600 Sobic003G198300 Sobic003G198300 Sobic004G272400--Sobic003G198300 Sobic004G252000 Sobic004G252000 Sobic004G272400--Sobic004G252000 Sobic001G401400 Sobic001G401400 Sobic004G272400--Sobic001G401400 Sobic003G130000 Sobic003G130000 Sobic004G272400--Sobic003G130000 Sobic006G041100 Sobic006G041100 Sobic004G272400--Sobic006G041100 Sobic003G235700 Sobic003G235700 Sobic004G272400--Sobic003G235700 Sobic008G083400 Sobic008G083400 Sobic004G272400--Sobic008G083400 Sobic002G150700 Sobic002G150700 Sobic001G007800--Sobic002G150700 Sobic004G307500 Sobic004G307500 Sobic001G007800--Sobic004G307500 Sobic004G340400 Sobic004G340400 Sobic001G007800--Sobic004G340400 Sobic007G143500 Sobic007G143500 Sobic001G007800--Sobic007G143500 Sobic001G334100 Sobic001G334100 Sobic001G007800--Sobic001G334100 Sobic009G235000 Sobic009G235000 Sobic001G007800--Sobic009G235000 Sobic006G193300 Sobic006G193300 Sobic001G007800--Sobic006G193300 Sobic008G160000 Sobic008G160000 Sobic001G007800--Sobic008G160000 Sobic007G089800 Sobic007G089800 Sobic001G007800--Sobic007G089800 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic009G258500 Sobic009G258500 Sobic003G198300--Sobic009G258500 Sobic009G102900 Sobic009G102900 Sobic003G198300--Sobic009G102900 Sobic009G211700 Sobic009G211700 Sobic003G198300--Sobic009G211700 Sobic004G249300 Sobic004G249300 Sobic003G198300--Sobic004G249300 Sobic003G198300--Sobic001G371100 Sobic008G115600 Sobic008G115600 Sobic003G198300--Sobic008G115600 Sobic009G201800 Sobic009G201800 Sobic003G198300--Sobic009G201800 Sobic003G198300--Sobic006G251600 Sobic003G198300--Sobic004G307500 Sobic002G423500 Sobic002G423500 Sobic004G252000--Sobic002G423500 Sobic004G326600 Sobic004G326600 Sobic004G252000--Sobic004G326600 Sobic002G014400 Sobic002G014400 Sobic004G252000--Sobic002G014400 Sobic004G252000--Sobic009G235000 Sobic004G252000--Sobic009G258500 Sobic004G252000--Sobic002G365900 Sobic004G047200 Sobic004G047200 Sobic004G252000--Sobic004G047200 Sobic006G135900 Sobic006G135900 Sobic004G252000--Sobic006G135900 Sobic006G084000 Sobic006G084000 Sobic004G252000--Sobic006G084000 Sobic004G036700 Sobic004G036700 Sobic001G401400--Sobic004G036700 Sobic001G401400--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic009G041800 Sobic009G041800 Sobic003G130000--Sobic009G041800 Sobic001G167500 Sobic001G167500 Sobic003G130000--Sobic001G167500 Sobic003G130000--Sobic003G235700 Sobic010G134100 Sobic010G134100 Sobic003G130000--Sobic010G134100 Sobic003G130000--Sobic006G251600 Sobic003G205400 Sobic003G205400 Sobic003G130000--Sobic003G205400 Sobic003G008600 Sobic003G008600 Sobic003G130000--Sobic003G008600 Sobic005G098000 Sobic005G098000 Sobic003G130000--Sobic005G098000 Sobic001G268300 Sobic001G268300 Sobic003G130000--Sobic001G268300 Sobic006G041100--Sobic002G423500 Sobic006G265600 Sobic006G265600 Sobic006G041100--Sobic006G265600 Sobic001G522000 Sobic001G522000 Sobic006G041100--Sobic001G522000 Sobic002G402500 Sobic002G402500 Sobic006G041100--Sobic002G402500 Sobic009G120500 Sobic009G120500 Sobic006G041100--Sobic009G120500 Sobic005G163700 Sobic005G163700 Sobic006G041100--Sobic005G163700 Sobic006G041100--Sobic004G047200 Sobic006G041100--Sobic001G008500 Sobic001G530800 Sobic001G530800 Sobic006G041100--Sobic001G530800 Sobic003G235700--Sobic003G130000 Sobic009G176300 Sobic009G176300 Sobic003G235700--Sobic009G176300 Sobic003G235700--Sobic005G098000 Sobic007G140100 Sobic007G140100 Sobic003G235700--Sobic007G140100 Sobic008G163400 Sobic008G163400 Sobic003G235700--Sobic008G163400 Sobic003G144000 Sobic003G144000 Sobic003G235700--Sobic003G144000 Sobic005G088900 Sobic005G088900 Sobic003G235700--Sobic005G088900 Sobic010G161525 Sobic010G161525 Sobic003G235700--Sobic010G161525 Sobic003G235700--Sobic001G268300 Sobic008G083400--Sobic006G251600 Sobic001G432300 Sobic001G432300 Sobic008G083400--Sobic001G432300 Sobic008G083400--Sobic001G371100 Sobic008G083400--Sobic004G249300 Sobic009G081500 Sobic009G081500 Sobic008G083400--Sobic009G081500 Sobic002G110400 Sobic002G110400 Sobic008G083400--Sobic002G110400 Sobic007G171200 Sobic007G171200 Sobic008G083400--Sobic007G171200 Sobic008G083400--Sobic001G008500 Sobic008G083400--Sobic003G407800
Octagon: transcription factors


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