Gene annotation
Transcriptome id Sobic.003G235700.1
Synonym Sb03g029310
Functional annotation single-stranded DNA-binding protein, putative, expressed
UniProt C5XF43
Pfam PF00436
Panther DB PTHR10302 PTHR10302:SF3
NCBI CDD KOG1653; Single-stranded DNA-binding protein
KEGG Orthology K03111; single-strand DNA-binding protein
Gene Ontology GO:0003697; single-stranded DNA binding GO:0006260DNA replication


Orthologs (automatic annotation)
TAIR AT3G18580 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os01g45530.1 : single-stranded DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a028270
Brachypodium PNT72477 , KQK08939 , KQK08938
Barley -
Wheat TraesCS3B02G260600 , TraesCS3A02G231400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
2 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
3 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B
4 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
5 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
6 Sobic.003G144000 pentatricopeptide, putative, expressed -
7 Sobic.005G088900 AGAP007117-PA, putative, expressed -
8 Sobic.010G161525 - -
9 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
10 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
11 Sobic.008G000600 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
12 Sobic.008G031200 pentatricopeptide, putative, expressed -
13 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
15 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
16 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
17 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
18 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
19 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
20 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G235700 Sobic003G235700 Sobic003G130000 Sobic003G130000 Sobic003G235700--Sobic003G130000 Sobic009G176300 Sobic009G176300 Sobic003G235700--Sobic009G176300 Sobic005G098000 Sobic005G098000 Sobic003G235700--Sobic005G098000 Sobic007G140100 Sobic007G140100 Sobic003G235700--Sobic007G140100 Sobic008G163400 Sobic008G163400 Sobic003G235700--Sobic008G163400 Sobic003G144000 Sobic003G144000 Sobic003G235700--Sobic003G144000 Sobic005G088900 Sobic005G088900 Sobic003G235700--Sobic005G088900 Sobic010G161525 Sobic010G161525 Sobic003G235700--Sobic010G161525 Sobic001G268300 Sobic001G268300 Sobic003G235700--Sobic001G268300 Sobic009G041800 Sobic009G041800 Sobic003G130000--Sobic009G041800 Sobic001G167500 Sobic001G167500 Sobic003G130000--Sobic001G167500 Sobic003G130000--Sobic003G235700 Sobic010G134100 Sobic010G134100 Sobic003G130000--Sobic010G134100 Sobic006G251600 Sobic006G251600 Sobic003G130000--Sobic006G251600 Sobic003G205400 Sobic003G205400 Sobic003G130000--Sobic003G205400 Sobic003G008600 Sobic003G008600 Sobic003G130000--Sobic003G008600 Sobic003G130000--Sobic005G098000 Sobic003G130000--Sobic001G268300 Sobic009G176300--Sobic005G088900 Sobic008G068100 Sobic008G068100 Sobic009G176300--Sobic008G068100 Sobic009G191500 Sobic009G191500 Sobic009G176300--Sobic009G191500 Sobic003G432300 Sobic003G432300 Sobic009G176300--Sobic003G432300 Sobic003G336500 Sobic003G336500 Sobic009G176300--Sobic003G336500 Sobic009G176300--Sobic003G235700 Sobic005G028100 Sobic005G028100 Sobic009G176300--Sobic005G028100 Sobic001G199500 Sobic001G199500 Sobic009G176300--Sobic001G199500 Sobic004G027400 Sobic004G027400 Sobic009G176300--Sobic004G027400 Sobic005G098000--Sobic010G161525 Sobic008G111600 Sobic008G111600 Sobic005G098000--Sobic008G111600 Sobic005G098000--Sobic003G144000 Sobic006G206200 Sobic006G206200 Sobic005G098000--Sobic006G206200 Sobic003G412000 Sobic003G412000 Sobic005G098000--Sobic003G412000 Sobic005G098000--Sobic003G432300 Sobic005G098000--Sobic003G130000 Sobic005G098000--Sobic005G088900 Sobic010G038800 Sobic010G038800 Sobic005G098000--Sobic010G038800 Sobic010G080900 Sobic010G080900 Sobic007G140100--Sobic010G080900 Sobic010G188900 Sobic010G188900 Sobic007G140100--Sobic010G188900 Sobic008G047500 Sobic008G047500 Sobic007G140100--Sobic008G047500 Sobic010G018900 Sobic010G018900 Sobic007G140100--Sobic010G018900 Sobic007G010200 Sobic007G010200 Sobic007G140100--Sobic007G010200 Sobic001G203600 Sobic001G203600 Sobic007G140100--Sobic001G203600 Sobic004G007700 Sobic004G007700 Sobic007G140100--Sobic004G007700 Sobic007G140100--Sobic001G268300 Sobic006G153200 Sobic006G153200 Sobic007G140100--Sobic006G153200 Sobic003G239000 Sobic003G239000 Sobic008G163400--Sobic003G239000 Sobic004G241000 Sobic004G241000 Sobic008G163400--Sobic004G241000 Sobic009G155400 Sobic009G155400 Sobic008G163400--Sobic009G155400 Sobic009G116400 Sobic009G116400 Sobic008G163400--Sobic009G116400 Sobic004G256900 Sobic004G256900 Sobic008G163400--Sobic004G256900 Sobic006G262800 Sobic006G262800 Sobic008G163400--Sobic006G262800 Sobic001G122200 Sobic001G122200 Sobic008G163400--Sobic001G122200 Sobic002G267600 Sobic002G267600 Sobic008G163400--Sobic002G267600 Sobic001G149100 Sobic001G149100 Sobic008G163400--Sobic001G149100 Sobic003G144000--Sobic005G088900 Sobic003G144000--Sobic001G199500 Sobic003G144000--Sobic010G038800 Sobic003G144000--Sobic008G111600 Sobic003G144000--Sobic003G432300 Sobic003G144000--Sobic005G098000 Sobic004G082700 Sobic004G082700 Sobic003G144000--Sobic004G082700 Sobic006G181800 Sobic006G181800 Sobic003G144000--Sobic006G181800 Sobic001G200200 Sobic001G200200 Sobic003G144000--Sobic001G200200 Sobic005G088900--Sobic001G199500 Sobic005G088900--Sobic009G191500 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic005G088900--Sobic008G068100 Sobic005G088900--Sobic003G432300 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300 Sobic010G161525--Sobic005G098000 Sobic010G161525--Sobic010G134100 Sobic010G161525--Sobic003G235700 Sobic007G114000 Sobic007G114000 Sobic010G161525--Sobic007G114000 Sobic004G212100 Sobic004G212100 Sobic010G161525--Sobic004G212100 Sobic010G161525--Sobic001G167500 Sobic002G367800 Sobic002G367800 Sobic010G161525--Sobic002G367800 Sobic007G188600 Sobic007G188600 Sobic010G161525--Sobic007G188600 Sobic002G071100 Sobic002G071100 Sobic010G161525--Sobic002G071100 Sobic001G268300--Sobic009G041800 Sobic008G179000 Sobic008G179000 Sobic001G268300--Sobic008G179000 Sobic001G268300--Sobic006G262800 Sobic002G362200 Sobic002G362200 Sobic001G268300--Sobic002G362200 Sobic008G031200 Sobic008G031200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic010G252200 Sobic010G252200 Sobic001G268300--Sobic010G252200 Sobic004G282500 Sobic004G282500 Sobic001G268300--Sobic004G282500 Sobic005G078700 Sobic005G078700 Sobic001G268300--Sobic005G078700
Octagon: transcription factors


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