Gene annotation
Transcriptome id Sobic.006G251600.1
Synonym RRP4, Sb06g031660, ATRRP4
Functional annotation exosome complex exonuclease rrp4, putative, expressed
UniProt C5Y9M2
Pfam PF15985
Panther DB PTHR21321 PTHR21321:SF4
NCBI CDD KOG3013; Exosomal 3'-5' exoribonuclease complex, subunit Rrp4
KEGG Orthology K03679; RRP4, exosome complex component RRP4
Gene Ontology GO:0003723; RNA binding GO:0000178exosome (RNase complex)


Orthologs (automatic annotation)
TAIR AT1G03360 : ribosomal RNA processing 4
RAP-DB (Rice) LOC_Os04g43922.1 : exosome complex exonuclease rrp4, putative, expressed
MaizeGDB (Corn) Zm00025a026878 , Zm00025a009442 , Zm00025a009440
Brachypodium KQK12566 , PNT61496 , KQJ83640
Barley HORVU6Hr1G026570.1 , HORVU6Hr1G026570.2 , HORVU6Hr1G026570.3
Wheat TraesCS7D02G188900 , TraesCS7D02G188900 , TraesCS7A02G187900 , TraesCS7A02G187900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
2 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
3 Sobic.006G225400 zinc finger protein, putative, expressed -
4 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
5 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
6 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
7 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
8 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
9 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
10 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
11 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
12 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
13 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
14 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
15 Sobic.005G088900 AGAP007117-PA, putative, expressed -
16 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
17 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
18 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
19 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
20 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M


Gene co-expression network
sample Sobic006G251600 Sobic006G251600 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic009G071700--Sobic006G198600 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic003G425100 Sobic003G425100 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic002G365900--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic002G365900--Sobic003G008600 Sobic002G365900--Sobic001G008500 Sobic002G423500 Sobic002G423500 Sobic002G365900--Sobic002G423500 Sobic002G365900--Sobic009G071700 Sobic004G252000 Sobic004G252000 Sobic002G365900--Sobic004G252000 Sobic001G488100 Sobic001G488100 Sobic002G365900--Sobic001G488100 Sobic002G365900--Sobic010G205900 Sobic002G365900--Sobic004G173100 Sobic005G028100 Sobic005G028100 Sobic006G225400--Sobic005G028100 Sobic006G225400--Sobic006G251600 Sobic004G036700 Sobic004G036700 Sobic006G225400--Sobic004G036700 Sobic006G225400--Sobic003G425100 Sobic006G225400--Sobic009G071700 Sobic006G225400--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic006G225400--Sobic003G123200 Sobic001G401400 Sobic001G401400 Sobic006G225400--Sobic001G401400 Sobic006G225400--Sobic006G198600 Sobic004G047200 Sobic004G047200 Sobic001G008500--Sobic004G047200 Sobic001G008500--Sobic006G251600 Sobic001G008500--Sobic003G008600 Sobic001G115500 Sobic001G115500 Sobic001G008500--Sobic001G115500 Sobic001G008500--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic001G008500--Sobic010G188000 Sobic001G436300 Sobic001G436300 Sobic001G008500--Sobic001G436300 Sobic001G008500--Sobic002G423500 Sobic001G008500--Sobic001G371100 Sobic008G083400--Sobic006G251600 Sobic001G432300 Sobic001G432300 Sobic008G083400--Sobic001G432300 Sobic008G083400--Sobic001G371100 Sobic004G249300 Sobic004G249300 Sobic008G083400--Sobic004G249300 Sobic009G081500 Sobic009G081500 Sobic008G083400--Sobic009G081500 Sobic002G110400 Sobic002G110400 Sobic008G083400--Sobic002G110400 Sobic007G171200 Sobic007G171200 Sobic008G083400--Sobic007G171200 Sobic008G083400--Sobic001G008500 Sobic003G407800 Sobic003G407800 Sobic008G083400--Sobic003G407800 Sobic006G198600--Sobic003G123200 Sobic006G198600--Sobic009G071700 Sobic006G198600--Sobic001G401400 Sobic008G163500 Sobic008G163500 Sobic006G198600--Sobic008G163500 Sobic006G198600--Sobic006G251600 Sobic008G049100 Sobic008G049100 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic006G198600--Sobic004G036700 Sobic001G157300 Sobic001G157300 Sobic006G198600--Sobic001G157300 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic010G205900--Sobic009G246500 Sobic010G205900--Sobic005G028100 Sobic002G071400 Sobic002G071400 Sobic010G205900--Sobic002G071400 Sobic005G098800 Sobic005G098800 Sobic010G205900--Sobic005G098800 Sobic010G205900--Sobic008G163500 Sobic003G199300 Sobic003G199300 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic004G173100--Sobic009G071700 Sobic004G173100--Sobic006G251600 Sobic004G173100--Sobic003G425100 Sobic002G262100 Sobic002G262100 Sobic004G173100--Sobic002G262100 Sobic004G173100--Sobic006G198600 Sobic002G399200 Sobic002G399200 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic004G173100--Sobic005G100900 Sobic004G173100--Sobic008G163500 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic001G371100--Sobic006G251600 Sobic001G371100--Sobic004G047200 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200
Octagon: transcription factors


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