Gene annotation
Transcriptome id Sobic.006G198600.1
Synonym TOZ, Sb06g027070
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5YF13
Pfam PF08625 PF00400
Panther DB PTHR19854 PTHR19854:SF15
NCBI CDD -
KEGG Orthology K14555; UTP13, U3 small nucleolar RNA-associated protein 13
Gene Ontology GO:0006364; rRNA processing GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G16750 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os04g50660.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009986 , Zm00025a027587 , Zm00025a056896
Brachypodium KQJ84312
Barley HORVU2Hr1G106110.11
Wheat TraesCS7D02G500800 , TraesCS2A02G447700 , TraesCS2B02G468100 , TraesCS2D02G446600 , TraesCS2D02G446600 , TraesCS7B02G423400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
2 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
3 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
4 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
5 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
6 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
7 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
8 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
9 Sobic.001G157300 expressed protein K14793: ribosomal RNA-processing protein 9
10 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
11 Sobic.006G225400 zinc finger protein, putative, expressed -
12 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
13 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
14 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
15 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
16 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
17 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
18 Sobic.007G188600 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
19 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
20 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial


Gene co-expression network
sample Sobic006G198600 Sobic006G198600 Sobic003G123200 Sobic003G123200 Sobic006G198600--Sobic003G123200 Sobic009G071700 Sobic009G071700 Sobic006G198600--Sobic009G071700 Sobic001G401400 Sobic001G401400 Sobic006G198600--Sobic001G401400 Sobic008G163500 Sobic008G163500 Sobic006G198600--Sobic008G163500 Sobic006G251600 Sobic006G251600 Sobic006G198600--Sobic006G251600 Sobic008G049100 Sobic008G049100 Sobic006G198600--Sobic008G049100 Sobic003G425100 Sobic003G425100 Sobic006G198600--Sobic003G425100 Sobic004G036700 Sobic004G036700 Sobic006G198600--Sobic004G036700 Sobic001G157300 Sobic001G157300 Sobic006G198600--Sobic001G157300 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic010G205900 Sobic010G205900 Sobic003G123200--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic005G028100 Sobic005G028100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic003G123200--Sobic006G198600 Sobic010G224700 Sobic010G224700 Sobic003G123200--Sobic010G224700 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic009G071700--Sobic006G198600 Sobic004G173100 Sobic004G173100 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic001G401400--Sobic004G036700 Sobic001G401400--Sobic006G198600 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic008G163500--Sobic009G246500 Sobic008G163500--Sobic010G205900 Sobic008G163500--Sobic008G049100 Sobic008G163500--Sobic005G098800 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic008G163500--Sobic004G036700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G251600--Sobic006G198600 Sobic006G251600--Sobic010G205900 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic008G049100--Sobic010G205900 Sobic002G071400 Sobic002G071400 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic003G425100--Sobic004G036700 Sobic004G036700--Sobic005G028100 Sobic004G036700--Sobic001G401400 Sobic004G036700--Sobic001G422500 Sobic004G036700--Sobic006G225400 Sobic004G036700--Sobic008G163500 Sobic004G036700--Sobic003G123200 Sobic004G036700--Sobic003G425100 Sobic004G036700--Sobic006G198600 Sobic004G036700--Sobic010G205900 Sobic001G157300--Sobic009G071700 Sobic002G262100 Sobic002G262100 Sobic001G157300--Sobic002G262100 Sobic001G157300--Sobic006G198600 Sobic001G119600 Sobic001G119600 Sobic001G157300--Sobic001G119600 Sobic001G157300--Sobic006G251600 Sobic001G157300--Sobic003G123200 Sobic001G157300--Sobic007G137350 Sobic001G157300--Sobic003G425100 Sobic001G157300--Sobic008G049100
Octagon: transcription factors


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