Gene annotation
Transcriptome id Sobic.007G188600.1
Synonym Sb07g025840
Functional annotation tRNA synthetase class II core domain containing protein, expressed
UniProt A0A1Z5RAK5
Pfam PF00458 PF00587 PF03129
Panther DB PTHR10745 PTHR10745:SF6
NCBI CDD -
KEGG Orthology K01880; GARS, glycyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT1G29880 : glycyl-tRNA synthetase / glycine--tRNA ligase
RAP-DB (Rice) LOC_Os08g42560.1 : tRNA synthetase class II core domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005318 , Zm00025a033597
Brachypodium KQJ99171 , KQJ99172
Barley HORVU7Hr1G055340.4 , HORVU7Hr1G055340.5 , HORVU7Hr1G055340.6 , HORVU7Hr1G055340.1 , HORVU7Hr1G055340.2 , HORVU7Hr1G055340.3
Wheat TraesCS7A02G264300 , TraesCS7D02G265200 , TraesCS7B02G162300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
2 Sobic.006G281500 prenylcysteine oxidase 1 precursor, putative, expressed K05906: PCYOX1, prenylcysteine oxidase / farnesylcysteine lyase
3 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
4 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
5 Sobic.010G161525 - -
6 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
7 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
8 Sobic.009G081500 per1-like family protein, putative, expressed -
9 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
10 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
11 Sobic.004G002200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
12 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
13 Sobic.002G143000 ubiquitin family protein, putative, expressed -
14 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
15 Sobic.009G227900 expressed protein K10581: ubiquitin-conjugating enzyme E2 O
16 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
17 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
18 Sobic.003G182400 DNA-damage-repair/toleration protein DRT102, putative, expressed -
19 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
20 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)


Gene co-expression network
sample Sobic007G188600 Sobic007G188600 Sobic006G198600 Sobic006G198600 Sobic007G188600--Sobic006G198600 Sobic006G281500 Sobic006G281500 Sobic007G188600--Sobic006G281500 Sobic002G402500 Sobic002G402500 Sobic007G188600--Sobic002G402500 Sobic002G423500 Sobic002G423500 Sobic007G188600--Sobic002G423500 Sobic010G161525 Sobic010G161525 Sobic007G188600--Sobic010G161525 Sobic006G251600 Sobic006G251600 Sobic007G188600--Sobic006G251600 Sobic006G157000 Sobic006G157000 Sobic007G188600--Sobic006G157000 Sobic009G081500 Sobic009G081500 Sobic007G188600--Sobic009G081500 Sobic008G083400 Sobic008G083400 Sobic007G188600--Sobic008G083400 Sobic003G123200 Sobic003G123200 Sobic006G198600--Sobic003G123200 Sobic009G071700 Sobic009G071700 Sobic006G198600--Sobic009G071700 Sobic001G401400 Sobic001G401400 Sobic006G198600--Sobic001G401400 Sobic008G163500 Sobic008G163500 Sobic006G198600--Sobic008G163500 Sobic006G198600--Sobic006G251600 Sobic008G049100 Sobic008G049100 Sobic006G198600--Sobic008G049100 Sobic003G425100 Sobic003G425100 Sobic006G198600--Sobic003G425100 Sobic004G036700 Sobic004G036700 Sobic006G198600--Sobic004G036700 Sobic001G157300 Sobic001G157300 Sobic006G198600--Sobic001G157300 Sobic001G263000 Sobic001G263000 Sobic006G281500--Sobic001G263000 Sobic009G227900 Sobic009G227900 Sobic006G281500--Sobic009G227900 Sobic006G281500--Sobic009G081500 Sobic002G317300 Sobic002G317300 Sobic006G281500--Sobic002G317300 Sobic005G105500 Sobic005G105500 Sobic006G281500--Sobic005G105500 Sobic002G259400 Sobic002G259400 Sobic006G281500--Sobic002G259400 Sobic006G281500--Sobic007G188600 Sobic003G119400 Sobic003G119400 Sobic006G281500--Sobic003G119400 Sobic010G085200 Sobic010G085200 Sobic006G281500--Sobic010G085200 Sobic003G326900 Sobic003G326900 Sobic002G402500--Sobic003G326900 Sobic003G205400 Sobic003G205400 Sobic002G402500--Sobic003G205400 Sobic003G388900 Sobic003G388900 Sobic002G402500--Sobic003G388900 Sobic001G060300 Sobic001G060300 Sobic002G402500--Sobic001G060300 Sobic001G214900 Sobic001G214900 Sobic002G402500--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic002G402500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G402500--Sobic006G041100 Sobic002G367800 Sobic002G367800 Sobic002G402500--Sobic002G367800 Sobic003G113400 Sobic003G113400 Sobic002G402500--Sobic003G113400 Sobic005G163700 Sobic005G163700 Sobic002G423500--Sobic005G163700 Sobic004G047200 Sobic004G047200 Sobic002G423500--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic002G423500--Sobic002G014400 Sobic001G460500 Sobic001G460500 Sobic002G423500--Sobic001G460500 Sobic004G326600 Sobic004G326600 Sobic002G423500--Sobic004G326600 Sobic004G215700 Sobic004G215700 Sobic002G423500--Sobic004G215700 Sobic002G423500--Sobic001G522000 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic005G098000 Sobic005G098000 Sobic010G161525--Sobic005G098000 Sobic010G134100 Sobic010G134100 Sobic010G161525--Sobic010G134100 Sobic003G235700 Sobic003G235700 Sobic010G161525--Sobic003G235700 Sobic007G114000 Sobic007G114000 Sobic010G161525--Sobic007G114000 Sobic004G212100 Sobic004G212100 Sobic010G161525--Sobic004G212100 Sobic001G167500 Sobic001G167500 Sobic010G161525--Sobic001G167500 Sobic010G161525--Sobic002G367800 Sobic010G161525--Sobic007G188600 Sobic002G071100 Sobic002G071100 Sobic010G161525--Sobic002G071100 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic006G251600--Sobic008G083400 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic003G309300 Sobic003G309300 Sobic006G157000--Sobic003G309300 Sobic006G157000--Sobic009G071700 Sobic009G072000 Sobic009G072000 Sobic006G157000--Sobic009G072000 Sobic010G216300 Sobic010G216300 Sobic006G157000--Sobic010G216300 Sobic001G468600 Sobic001G468600 Sobic006G157000--Sobic001G468600 Sobic008G017200 Sobic008G017200 Sobic006G157000--Sobic008G017200 Sobic006G010400 Sobic006G010400 Sobic006G157000--Sobic006G010400 Sobic004G124100 Sobic004G124100 Sobic006G157000--Sobic004G124100 Sobic006G157000--Sobic007G114000 Sobic009G081500--Sobic008G083400 Sobic009G081500--Sobic006G281500 Sobic009G151800 Sobic009G151800 Sobic009G081500--Sobic009G151800 Sobic009G081500--Sobic001G460500 Sobic009G081500--Sobic006G251600 Sobic009G081500--Sobic007G188600 Sobic009G081500--Sobic002G423500 Sobic001G004200 Sobic001G004200 Sobic009G081500--Sobic001G004200 Sobic006G208400 Sobic006G208400 Sobic009G081500--Sobic006G208400 Sobic008G083400--Sobic006G251600 Sobic001G432300 Sobic001G432300 Sobic008G083400--Sobic001G432300 Sobic008G083400--Sobic001G371100 Sobic004G249300 Sobic004G249300 Sobic008G083400--Sobic004G249300 Sobic008G083400--Sobic009G081500 Sobic002G110400 Sobic002G110400 Sobic008G083400--Sobic002G110400 Sobic007G171200 Sobic007G171200 Sobic008G083400--Sobic007G171200 Sobic008G083400--Sobic001G008500 Sobic003G407800 Sobic003G407800 Sobic008G083400--Sobic003G407800
Octagon: transcription factors


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