Gene annotation
Transcriptome id Sobic.008G083400.1
Synonym Sb08g008320
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
argininosuccinate synthase, chloroplast precursor, putative, expressed
UniProt C5YU02
Pfam PF00764
Panther DB PTHR11587 PTHR11587:SF2
NCBI CDD -
KEGG Orthology K01940; argG, argininosuccinate synthase
Gene Ontology GO:0006526; arginine biosynthetic process GO:0005524ATP binding GO:0004055argininosuccinate synthase activity


Orthologs (automatic annotation)
TAIR AT4G24830 : arginosuccinate synthase family
RAP-DB (Rice) LOC_Os12g13320.1 : argininosuccinate synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a054542
Brachypodium PNT71348 , KQK06460 , KQJ85829
Barley HORVU1Hr1G062900.6 , HORVU1Hr1G062900.7 , HORVU1Hr1G062900.4 , HORVU1Hr1G062900.5 , HORVU1Hr1G062900.2 , HORVU1Hr1G062900.1
Wheat TraesCS1A02G246600 , TraesCS1B02G257300 , TraesCS1D02G245900 , TraesCS1D02G245900
Populus -


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cDNA sequences
Sobic.008G083400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
2 Sobic.001G432300 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed K01663: imidazole glycerol-phosphate synthase
3 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
4 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
5 Sobic.009G081500 per1-like family protein, putative, expressed -
6 Sobic.002G110400 pentatricopeptide domain containing protein, putative, expressed -
7 Sobic.007G171200 dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
8 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
9 Sobic.003G407800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
10 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
11 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
12 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
13 Sobic.006G225400 zinc finger protein, putative, expressed -
14 Sobic.010G125100 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
15 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
16 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase
17 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
18 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
19 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
20 Sobic.007G043400 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase


Gene co-expression network
sample Sobic008G083400 Sobic008G083400 Sobic006G251600 Sobic006G251600 Sobic008G083400--Sobic006G251600 Sobic001G432300 Sobic001G432300 Sobic008G083400--Sobic001G432300 Sobic001G371100 Sobic001G371100 Sobic008G083400--Sobic001G371100 Sobic004G249300 Sobic004G249300 Sobic008G083400--Sobic004G249300 Sobic009G081500 Sobic009G081500 Sobic008G083400--Sobic009G081500 Sobic002G110400 Sobic002G110400 Sobic008G083400--Sobic002G110400 Sobic007G171200 Sobic007G171200 Sobic008G083400--Sobic007G171200 Sobic001G008500 Sobic001G008500 Sobic008G083400--Sobic001G008500 Sobic003G407800 Sobic003G407800 Sobic008G083400--Sobic003G407800 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic006G251600--Sobic001G008500 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic006G251600--Sobic001G371100 Sobic001G432300--Sobic008G083400 Sobic003G130600 Sobic003G130600 Sobic001G432300--Sobic003G130600 Sobic001G432300--Sobic004G249300 Sobic001G242800 Sobic001G242800 Sobic001G432300--Sobic001G242800 Sobic008G156300 Sobic008G156300 Sobic001G432300--Sobic008G156300 Sobic004G326600 Sobic004G326600 Sobic001G432300--Sobic004G326600 Sobic002G392800 Sobic002G392800 Sobic001G432300--Sobic002G392800 Sobic001G228200 Sobic001G228200 Sobic001G432300--Sobic001G228200 Sobic008G191500 Sobic008G191500 Sobic001G432300--Sobic008G191500 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G371100--Sobic001G228200 Sobic002G341800 Sobic002G341800 Sobic004G249300--Sobic002G341800 Sobic009G201800 Sobic009G201800 Sobic004G249300--Sobic009G201800 Sobic001G115500 Sobic001G115500 Sobic004G249300--Sobic001G115500 Sobic002G077900 Sobic002G077900 Sobic004G249300--Sobic002G077900 Sobic004G249300--Sobic008G083400 Sobic010G247400 Sobic010G247400 Sobic004G249300--Sobic010G247400 Sobic003G118400 Sobic003G118400 Sobic004G249300--Sobic003G118400 Sobic009G102900 Sobic009G102900 Sobic004G249300--Sobic009G102900 Sobic001G370300 Sobic001G370300 Sobic004G249300--Sobic001G370300 Sobic009G081500--Sobic008G083400 Sobic006G281500 Sobic006G281500 Sobic009G081500--Sobic006G281500 Sobic009G151800 Sobic009G151800 Sobic009G081500--Sobic009G151800 Sobic001G460500 Sobic001G460500 Sobic009G081500--Sobic001G460500 Sobic009G081500--Sobic006G251600 Sobic007G188600 Sobic007G188600 Sobic009G081500--Sobic007G188600 Sobic002G423500 Sobic002G423500 Sobic009G081500--Sobic002G423500 Sobic001G004200 Sobic001G004200 Sobic009G081500--Sobic001G004200 Sobic006G208400 Sobic006G208400 Sobic009G081500--Sobic006G208400 Sobic002G110400--Sobic008G083400 Sobic002G426400 Sobic002G426400 Sobic002G110400--Sobic002G426400 Sobic010G252700 Sobic010G252700 Sobic002G110400--Sobic010G252700 Sobic001G149100 Sobic001G149100 Sobic002G110400--Sobic001G149100 Sobic002G110400--Sobic006G208400 Sobic008G179000 Sobic008G179000 Sobic002G110400--Sobic008G179000 Sobic002G110400--Sobic006G251600 Sobic002G110400--Sobic001G460500 Sobic005G059400 Sobic005G059400 Sobic002G110400--Sobic005G059400 Sobic010G125100 Sobic010G125100 Sobic007G171200--Sobic010G125100 Sobic007G171200--Sobic008G083400 Sobic007G171200--Sobic001G081900 Sobic007G171200--Sobic010G032700 Sobic007G171200--Sobic001G371100 Sobic002G054000 Sobic002G054000 Sobic007G171200--Sobic002G054000 Sobic007G134800 Sobic007G134800 Sobic007G171200--Sobic007G134800 Sobic006G243400 Sobic006G243400 Sobic007G171200--Sobic006G243400 Sobic002G101000 Sobic002G101000 Sobic007G171200--Sobic002G101000 Sobic001G008500--Sobic004G047200 Sobic001G008500--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic001G008500--Sobic003G008600 Sobic001G008500--Sobic001G115500 Sobic001G008500--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic001G008500--Sobic010G188000 Sobic001G436300 Sobic001G436300 Sobic001G008500--Sobic001G436300 Sobic001G008500--Sobic002G423500 Sobic001G008500--Sobic001G371100 Sobic001G401400 Sobic001G401400 Sobic003G407800--Sobic001G401400 Sobic003G407800--Sobic006G251600 Sobic003G407800--Sobic004G326600 Sobic001G372800 Sobic001G372800 Sobic003G407800--Sobic001G372800 Sobic003G407800--Sobic001G371100 Sobic003G407800--Sobic008G083400 Sobic003G407600 Sobic003G407600 Sobic003G407800--Sobic003G407600 Sobic004G036700 Sobic004G036700 Sobic003G407800--Sobic004G036700 Sobic005G028100 Sobic005G028100 Sobic003G407800--Sobic005G028100
Octagon: transcription factors


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