Gene annotation
Transcriptome id Sobic.002G110400.2,Sobic.002G110400.1
Synonym Sb02g009440
Functional annotation pentatricopeptide domain containing protein, putative, expressed
UniProt C5X479 , C5X480
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF672
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G71490 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g19400.1 : pentatricopeptide domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045647 , Zm00025a013499
Brachypodium -
Barley -
Wheat TraesCS7B02G368500
Populus PNT41961


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
2 Sobic.002G426400 OsLonP3 - Putative Lon protease homologue, expressed K08675: PRSS15, ATP-dependent Lon protease
3 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
4 Sobic.001G149100 vegetative storage protein, putative, expressed -
5 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
6 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
8 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
9 Sobic.005G059400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized PPR-repeat protein, putative, expressed -
10 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.009G105900 amino acid permease family protein, putative, expressed K14427: SLC12A4_6, solute carrier family 12 (potassium/chloride transporter), member 4/6
12 Sobic.006G173200 beige/BEACH domain containing protein, expressed -
13 Sobic.006G069100 pentatricopeptide, putative, expressed -
14 Sobic.010G250800 DNA binding protein, putative, expressed -
15 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
16 Sobic.002G268100 - K16911: ATP-dependent RNA helicase DDX21
17 Sobic.009G010300 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
18 Sobic.001G159800 KIP1, putative, expressed -
19 Sobic.010G236600 oligopeptidase, putative, expressed K01410: mitochondrial intermediate peptidase
20 Sobic.007G010900 esterase, putative, expressed -


Gene co-expression network
sample Sobic002G110400 Sobic002G110400 Sobic008G083400 Sobic008G083400 Sobic002G110400--Sobic008G083400 Sobic002G426400 Sobic002G426400 Sobic002G110400--Sobic002G426400 Sobic010G252700 Sobic010G252700 Sobic002G110400--Sobic010G252700 Sobic001G149100 Sobic001G149100 Sobic002G110400--Sobic001G149100 Sobic006G208400 Sobic006G208400 Sobic002G110400--Sobic006G208400 Sobic008G179000 Sobic008G179000 Sobic002G110400--Sobic008G179000 Sobic006G251600 Sobic006G251600 Sobic002G110400--Sobic006G251600 Sobic001G460500 Sobic001G460500 Sobic002G110400--Sobic001G460500 Sobic005G059400 Sobic005G059400 Sobic002G110400--Sobic005G059400 Sobic008G083400--Sobic006G251600 Sobic001G432300 Sobic001G432300 Sobic008G083400--Sobic001G432300 Sobic001G371100 Sobic001G371100 Sobic008G083400--Sobic001G371100 Sobic004G249300 Sobic004G249300 Sobic008G083400--Sobic004G249300 Sobic009G081500 Sobic009G081500 Sobic008G083400--Sobic009G081500 Sobic008G083400--Sobic002G110400 Sobic007G171200 Sobic007G171200 Sobic008G083400--Sobic007G171200 Sobic001G008500 Sobic001G008500 Sobic008G083400--Sobic001G008500 Sobic003G407800 Sobic003G407800 Sobic008G083400--Sobic003G407800 Sobic009G041800 Sobic009G041800 Sobic002G426400--Sobic009G041800 Sobic004G212100 Sobic004G212100 Sobic002G426400--Sobic004G212100 Sobic003G130000 Sobic003G130000 Sobic002G426400--Sobic003G130000 Sobic002G423500 Sobic002G423500 Sobic002G426400--Sobic002G423500 Sobic002G426400--Sobic002G110400 Sobic002G426400--Sobic010G252700 Sobic001G024000 Sobic001G024000 Sobic002G426400--Sobic001G024000 Sobic001G522000 Sobic001G522000 Sobic002G426400--Sobic001G522000 Sobic004G034300 Sobic004G034300 Sobic002G426400--Sobic004G034300 Sobic010G252700--Sobic008G179000 Sobic007G123100 Sobic007G123100 Sobic010G252700--Sobic007G123100 Sobic009G052100 Sobic009G052100 Sobic010G252700--Sobic009G052100 Sobic002G362200 Sobic002G362200 Sobic010G252700--Sobic002G362200 Sobic010G252700--Sobic001G149100 Sobic008G031200 Sobic008G031200 Sobic010G252700--Sobic008G031200 Sobic008G090000 Sobic008G090000 Sobic010G252700--Sobic008G090000 Sobic006G071628 Sobic006G071628 Sobic010G252700--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic010G252700--Sobic010G250800 Sobic001G347100 Sobic001G347100 Sobic001G149100--Sobic001G347100 Sobic003G299200 Sobic003G299200 Sobic001G149100--Sobic003G299200 Sobic001G149100--Sobic010G252700 Sobic001G149100--Sobic008G179000 Sobic004G241000 Sobic004G241000 Sobic001G149100--Sobic004G241000 Sobic008G163400 Sobic008G163400 Sobic001G149100--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic001G149100--Sobic003G239000 Sobic006G069100 Sobic006G069100 Sobic001G149100--Sobic006G069100 Sobic002G267600 Sobic002G267600 Sobic001G149100--Sobic002G267600 Sobic004G354000 Sobic004G354000 Sobic006G208400--Sobic004G354000 Sobic010G236600 Sobic010G236600 Sobic006G208400--Sobic010G236600 Sobic008G017100 Sobic008G017100 Sobic006G208400--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic006G208400--Sobic001G460500 Sobic002G423400 Sobic002G423400 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700 Sobic008G179000--Sobic010G252700 Sobic008G179000--Sobic008G031200 Sobic001G268300 Sobic001G268300 Sobic008G179000--Sobic001G268300 Sobic008G179000--Sobic002G362200 Sobic008G179000--Sobic007G123100 Sobic008G179000--Sobic001G149100 Sobic008G179000--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic008G179000--Sobic004G256900 Sobic008G009000 Sobic008G009000 Sobic008G179000--Sobic008G009000 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic006G251600--Sobic001G008500 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic006G251600--Sobic001G371100 Sobic005G163700 Sobic005G163700 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic001G460500--Sobic002G014400 Sobic004G208500 Sobic004G208500 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic004G047200 Sobic004G047200 Sobic001G460500--Sobic004G047200 Sobic002G412700 Sobic002G412700 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic001G334100 Sobic001G334100 Sobic005G059400--Sobic001G334100 Sobic003G259600 Sobic003G259600 Sobic005G059400--Sobic003G259600 Sobic002G218700 Sobic002G218700 Sobic005G059400--Sobic002G218700 Sobic005G059400--Sobic001G347100 Sobic006G180700 Sobic006G180700 Sobic005G059400--Sobic006G180700 Sobic005G199200 Sobic005G199200 Sobic005G059400--Sobic005G199200 Sobic004G036700 Sobic004G036700 Sobic005G059400--Sobic004G036700 Sobic002G132600 Sobic002G132600 Sobic005G059400--Sobic002G132600 Sobic003G184400 Sobic003G184400 Sobic005G059400--Sobic003G184400
Octagon: transcription factors


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