Gene annotation
Transcriptome id Sobic.010G236600.2,Sobic.010G236600.1
Synonym Sb10g027820
Functional annotation oligopeptidase, putative, expressed
UniProt A0A1W0VUF7 , C5Z8A9
Pfam PF01432
Panther DB PTHR11804 PTHR11804:SF5
NCBI CDD -
KEGG Orthology K01410; mitochondrial intermediate peptidase
Gene Ontology GO:0006508; proteolysis GO:0004222metalloendopeptidase activity


Orthologs (automatic annotation)
TAIR AT5G51540 : Zincin-like metalloproteases family protein
RAP-DB (Rice) LOC_Os06g47210.1 : oligopeptidase, putative, expressed
MaizeGDB (Corn) Zm00025a018182
Brachypodium KQK17239
Barley HORVU7Hr1G101170.39 , HORVU7Hr1G101170.38 , HORVU7Hr1G101170.33 , HORVU7Hr1G101170.32 , HORVU7Hr1G101170.31 , HORVU7Hr1G101170.30 , HORVU7Hr1G101170.37 , HORVU7Hr1G101170.36 , HORVU7Hr1G101170.35 , HORVU7Hr1G101170.34 , HORVU7Hr1G101170.28 , HORVU7Hr1G101170.29 , HORVU7Hr1G101170.20 , HORVU7Hr1G101170.21 , HORVU7Hr1G101170.22 , HORVU7Hr1G101170.23 , HORVU7Hr1G101170.24 , HORVU7Hr1G101170.26 , HORVU7Hr1G101170.27 , HORVU7Hr1G101170.19 , HORVU7Hr1G101170.18 , HORVU7Hr1G101170.15 , HORVU7Hr1G101170.14 , HORVU7Hr1G101170.17 , HORVU7Hr1G101170.16 , HORVU7Hr1G101170.11 , HORVU7Hr1G101170.10 , HORVU7Hr1G101170.13 , HORVU7Hr1G101170.12 , HORVU7Hr1G101170.9 , HORVU7Hr1G101170.8 , HORVU7Hr1G101170.1 , HORVU7Hr1G101170.3 , HORVU7Hr1G101170.2 , HORVU7Hr1G101170.5 , HORVU7Hr1G101170.4 , HORVU7Hr1G101170.7 , HORVU7Hr1G101170.6 , HORVU7Hr1G101170.50 , HORVU7Hr1G101170.51 , HORVU7Hr1G101170.53 , HORVU7Hr1G101170.52 , HORVU7Hr1G101170.54 , HORVU7Hr1G101170.48 , HORVU7Hr1G101170.49 , HORVU7Hr1G101170.46 , HORVU7Hr1G101170.47 , HORVU7Hr1G101170.44 , HORVU7Hr1G101170.45 , HORVU7Hr1G101170.42 , HORVU7Hr1G101170.43 , HORVU7Hr1G101170.40 , HORVU7Hr1G101170.41
Wheat TraesCS7D02G435600 , TraesCS7D02G435600 , TraesCS7D02G435600 , TraesCS7D02G435600 , TraesCS7A02G446300 , TraesCS7A02G446300 , TraesCS7A02G446300 , TraesCS7B02G346000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
2 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
3 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
4 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
5 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
6 Sobic.002G145300 ZOS7-13 - C2H2 zinc finger protein, expressed K11436: type I protein arginine methyltransferase
7 Sobic.010G250800 DNA binding protein, putative, expressed -
8 Sobic.001G368100 expressed protein K18158: nuclear control of ATPase protein 2
9 Sobic.002G056400 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
10 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
11 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
12 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
13 Sobic.001G159800 KIP1, putative, expressed -
14 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
15 Sobic.009G105900 amino acid permease family protein, putative, expressed K14427: SLC12A4_6, solute carrier family 12 (potassium/chloride transporter), member 4/6
16 Sobic.006G071628 - -
17 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
18 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
20 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1


Gene co-expression network
sample Sobic010G236600 Sobic010G236600 Sobic006G208400 Sobic006G208400 Sobic010G236600--Sobic006G208400 Sobic010G188000 Sobic010G188000 Sobic010G236600--Sobic010G188000 Sobic009G045900 Sobic009G045900 Sobic010G236600--Sobic009G045900 Sobic001G460500 Sobic001G460500 Sobic010G236600--Sobic001G460500 Sobic003G008600 Sobic003G008600 Sobic010G236600--Sobic003G008600 Sobic002G145300 Sobic002G145300 Sobic010G236600--Sobic002G145300 Sobic010G250800 Sobic010G250800 Sobic010G236600--Sobic010G250800 Sobic001G368100 Sobic001G368100 Sobic010G236600--Sobic001G368100 Sobic002G056400 Sobic002G056400 Sobic010G236600--Sobic002G056400 Sobic004G354000 Sobic004G354000 Sobic006G208400--Sobic004G354000 Sobic006G208400--Sobic010G236600 Sobic008G017100 Sobic008G017100 Sobic006G208400--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic006G208400--Sobic001G460500 Sobic002G423400 Sobic002G423400 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700 Sobic001G373000 Sobic001G373000 Sobic010G188000--Sobic001G373000 Sobic004G038100 Sobic004G038100 Sobic010G188000--Sobic004G038100 Sobic002G371600 Sobic002G371600 Sobic010G188000--Sobic002G371600 Sobic006G181800 Sobic006G181800 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic004G315500 Sobic004G315500 Sobic010G188000--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic010G188000--Sobic005G010900 Sobic010G188000--Sobic010G236600 Sobic008G135200 Sobic008G135200 Sobic009G045900--Sobic008G135200 Sobic002G047000 Sobic002G047000 Sobic009G045900--Sobic002G047000 Sobic002G246700 Sobic002G246700 Sobic009G045900--Sobic002G246700 Sobic002G408900 Sobic002G408900 Sobic009G045900--Sobic002G408900 Sobic001G090100 Sobic001G090100 Sobic009G045900--Sobic001G090100 Sobic009G045900--Sobic003G314700 Sobic010G206300 Sobic010G206300 Sobic009G045900--Sobic010G206300 Sobic001G248100 Sobic001G248100 Sobic009G045900--Sobic001G248100 Sobic001G537500 Sobic001G537500 Sobic009G045900--Sobic001G537500 Sobic005G163700 Sobic005G163700 Sobic001G460500--Sobic005G163700 Sobic002G423500 Sobic002G423500 Sobic001G460500--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic001G460500--Sobic002G014400 Sobic004G208500 Sobic004G208500 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic004G047200 Sobic004G047200 Sobic001G460500--Sobic004G047200 Sobic002G412700 Sobic002G412700 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic001G008500 Sobic001G008500 Sobic003G008600--Sobic001G008500 Sobic001G115500 Sobic001G115500 Sobic003G008600--Sobic001G115500 Sobic003G008600--Sobic002G423500 Sobic002G365900 Sobic002G365900 Sobic003G008600--Sobic002G365900 Sobic002G208400 Sobic002G208400 Sobic003G008600--Sobic002G208400 Sobic004G215700 Sobic004G215700 Sobic003G008600--Sobic004G215700 Sobic003G008600--Sobic001G460500 Sobic004G075200 Sobic004G075200 Sobic003G008600--Sobic004G075200 Sobic003G130000 Sobic003G130000 Sobic003G008600--Sobic003G130000 Sobic002G145300--Sobic010G236600 Sobic002G145300--Sobic001G368100 Sobic001G073150 Sobic001G073150 Sobic002G145300--Sobic001G073150 Sobic005G012800 Sobic005G012800 Sobic002G145300--Sobic005G012800 Sobic004G082700 Sobic004G082700 Sobic002G145300--Sobic004G082700 Sobic002G152900 Sobic002G152900 Sobic002G145300--Sobic002G152900 Sobic007G137350 Sobic007G137350 Sobic002G145300--Sobic007G137350 Sobic006G198600 Sobic006G198600 Sobic002G145300--Sobic006G198600 Sobic003G123200 Sobic003G123200 Sobic002G145300--Sobic003G123200 Sobic009G052100 Sobic009G052100 Sobic010G250800--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic010G250800--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic010G250800--Sobic006G071628 Sobic010G250800--Sobic001G408300 Sobic001G385400 Sobic001G385400 Sobic010G250800--Sobic001G385400 Sobic009G167100 Sobic009G167100 Sobic010G250800--Sobic009G167100 Sobic005G088900 Sobic005G088900 Sobic010G250800--Sobic005G088900 Sobic009G049200 Sobic009G049200 Sobic010G250800--Sobic009G049200 Sobic010G250800--Sobic004G038100 Sobic001G368100--Sobic006G071628 Sobic001G368100--Sobic002G152900 Sobic001G368100--Sobic010G188000 Sobic007G139500 Sobic007G139500 Sobic001G368100--Sobic007G139500 Sobic001G368100--Sobic004G215700 Sobic009G214100 Sobic009G214100 Sobic001G368100--Sobic009G214100 Sobic007G173000 Sobic007G173000 Sobic001G368100--Sobic007G173000 Sobic004G156200 Sobic004G156200 Sobic001G368100--Sobic004G156200 Sobic001G368100--Sobic010G236600 Sobic002G056400--Sobic010G188000 Sobic002G056400--Sobic002G152900 Sobic002G056400--Sobic010G236600 Sobic007G114000 Sobic007G114000 Sobic002G056400--Sobic007G114000 Sobic002G056400--Sobic004G082700 Sobic002G056400--Sobic001G368100 Sobic002G056400--Sobic003G008600 Sobic002G264300 Sobic002G264300 Sobic002G056400--Sobic002G264300 Sobic002G056400--Sobic001G008500
Octagon: transcription factors


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