Gene annotation
Transcriptome id Sobic.009G105900.1
Synonym Sb09g017170, ATCCC1, HAP5, CCC1
Functional annotation amino acid permease family protein, putative, expressed
UniProt C5YWN4
Pfam PF03522 PF00324
Panther DB PTHR11827 PTHR11827:SF68
NCBI CDD -
KEGG Orthology K14427; SLC12A4_6, solute carrier family 12 (potassium/chloride transporter), member 4/6
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005215transporter activity GO:0006810transport


Orthologs (automatic annotation)
TAIR AT1G30450 : cation-chloride co-transporter 1
RAP-DB (Rice) LOC_Os08g23440.1 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a033506
Brachypodium PNT70428 , KQK04093 , PNT70427 , PNT70426 , PNT70425 , KQK20003 , KQK20001 , KQK06750 , KQK20002 , KQK04094 , PNT71488 , KQK06749
Barley HORVU2Hr1G011870.9 , HORVU2Hr1G011870.8 , HORVU2Hr1G011870.3 , HORVU2Hr1G011870.2 , HORVU2Hr1G011870.1 , HORVU2Hr1G011870.7 , HORVU2Hr1G011870.6 , HORVU2Hr1G011870.5 , HORVU2Hr1G011870.4 , HORVU7Hr1G058140.5 , HORVU7Hr1G058140.4 , HORVU7Hr1G058140.7 , HORVU7Hr1G058140.1 , HORVU7Hr1G058140.3 , HORVU7Hr1G058140.2 , HORVU7Hr1G058140.9 , HORVU7Hr1G058140.8 , HORVU7Hr1G058140.11 , HORVU7Hr1G058140.10 , HORVU7Hr1G058140.13 , HORVU7Hr1G058140.12 , HORVU7Hr1G058140.15 , HORVU7Hr1G058140.14 , HORVU7Hr1G058140.17 , HORVU7Hr1G058140.16 , HORVU7Hr1G058140.18 , HORVU2Hr1G011870.12 , HORVU2Hr1G011870.11 , HORVU2Hr1G011870.10 , HORVU7Hr1G058130.4 , HORVU7Hr1G058130.5 , HORVU7Hr1G058130.6 , HORVU7Hr1G058130.1 , HORVU7Hr1G058130.2 , HORVU7Hr1G058130.3
Wheat TraesCS5B02G368800 , TraesCS7D02G276400 , TraesCS2A02G059800 , TraesCS5D02G375900 , TraesCS7A02G276500 , TraesCS7B02G174200 , TraesCS5A02G366700 , TraesCS2D02G058700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G327000 villin protein, putative, expressed -
2 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
3 Sobic.006G056200 transport protein particle component, Bet3, domain containing protein, expressed -
4 Sobic.007G010900 esterase, putative, expressed -
5 Sobic.006G173200 beige/BEACH domain containing protein, expressed -
6 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
7 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
8 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
9 Sobic.002G194800 expressed protein -
10 Sobic.007G120800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
11 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
12 Sobic.009G118900 expressed protein -
13 Sobic.010G269100 zinc finger family protein, putative, expressed -
14 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
15 Sobic.007G187900 OsFBX187 - F-box domain containing protein, expressed -
16 Sobic.001G432300 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed K01663: imidazole glycerol-phosphate synthase
17 Sobic.006G281000 methyltransferase, putative, expressed -
18 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
19 Sobic.010G236600 oligopeptidase, putative, expressed K01410: mitochondrial intermediate peptidase
20 Sobic.003G227100 adaptin, putative, expressed -


Gene co-expression network
sample Sobic009G105900 Sobic009G105900 Sobic002G327000 Sobic002G327000 Sobic009G105900--Sobic002G327000 Sobic002G423500 Sobic002G423500 Sobic009G105900--Sobic002G423500 Sobic006G056200 Sobic006G056200 Sobic009G105900--Sobic006G056200 Sobic007G010900 Sobic007G010900 Sobic009G105900--Sobic007G010900 Sobic006G173200 Sobic006G173200 Sobic009G105900--Sobic006G173200 Sobic005G163700 Sobic005G163700 Sobic009G105900--Sobic005G163700 Sobic004G047200 Sobic004G047200 Sobic009G105900--Sobic004G047200 Sobic001G460500 Sobic001G460500 Sobic009G105900--Sobic001G460500 Sobic002G194800 Sobic002G194800 Sobic009G105900--Sobic002G194800 Sobic004G344901 Sobic004G344901 Sobic002G327000--Sobic004G344901 Sobic003G144300 Sobic003G144300 Sobic002G327000--Sobic003G144300 Sobic002G327000--Sobic009G105900 Sobic008G124800 Sobic008G124800 Sobic002G327000--Sobic008G124800 Sobic001G426600 Sobic001G426600 Sobic002G327000--Sobic001G426600 Sobic003G227100 Sobic003G227100 Sobic002G327000--Sobic003G227100 Sobic003G337300 Sobic003G337300 Sobic002G327000--Sobic003G337300 Sobic001G163400 Sobic001G163400 Sobic002G327000--Sobic001G163400 Sobic001G051700 Sobic001G051700 Sobic002G327000--Sobic001G051700 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic002G423500--Sobic002G014400 Sobic002G423500--Sobic001G460500 Sobic004G326600 Sobic004G326600 Sobic002G423500--Sobic004G326600 Sobic004G215700 Sobic004G215700 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic004G039600 Sobic004G039600 Sobic006G056200--Sobic004G039600 Sobic008G055900 Sobic008G055900 Sobic006G056200--Sobic008G055900 Sobic008G129600 Sobic008G129600 Sobic006G056200--Sobic008G129600 Sobic003G099300 Sobic003G099300 Sobic006G056200--Sobic003G099300 Sobic009G226400 Sobic009G226400 Sobic006G056200--Sobic009G226400 Sobic008G103300 Sobic008G103300 Sobic006G056200--Sobic008G103300 Sobic001G369000 Sobic001G369000 Sobic006G056200--Sobic001G369000 SobicK004100 SobicK004100 Sobic006G056200--SobicK004100 Sobic002G029300 Sobic002G029300 Sobic006G056200--Sobic002G029300 Sobic007G010900--Sobic009G105900 Sobic008G125000 Sobic008G125000 Sobic007G010900--Sobic008G125000 Sobic003G307900 Sobic003G307900 Sobic007G010900--Sobic003G307900 Sobic007G010900--Sobic004G047200 Sobic001G373000 Sobic001G373000 Sobic007G010900--Sobic001G373000 Sobic007G010900--Sobic006G056200 Sobic008G013300 Sobic008G013300 Sobic007G010900--Sobic008G013300 Sobic002G318600 Sobic002G318600 Sobic007G010900--Sobic002G318600 Sobic006G233300 Sobic006G233300 Sobic007G010900--Sobic006G233300 Sobic001G507200 Sobic001G507200 Sobic006G173200--Sobic001G507200 Sobic009G073400 Sobic009G073400 Sobic006G173200--Sobic009G073400 Sobic003G435500 Sobic003G435500 Sobic006G173200--Sobic003G435500 Sobic001G159800 Sobic001G159800 Sobic006G173200--Sobic001G159800 Sobic010G090500 Sobic010G090500 Sobic006G173200--Sobic010G090500 Sobic006G173200--Sobic009G105900 Sobic001G385400 Sobic001G385400 Sobic006G173200--Sobic001G385400 Sobic010G250800 Sobic010G250800 Sobic006G173200--Sobic010G250800 Sobic009G052100 Sobic009G052100 Sobic006G173200--Sobic009G052100 Sobic005G163700--Sobic001G460500 Sobic005G163700--Sobic002G423500 Sobic005G163700--Sobic002G014400 Sobic005G163700--Sobic004G047200 Sobic005G163700--Sobic004G215700 Sobic005G163700--Sobic004G326600 Sobic005G163700--Sobic001G467100 Sobic004G208500 Sobic004G208500 Sobic005G163700--Sobic004G208500 Sobic002G412700 Sobic002G412700 Sobic005G163700--Sobic002G412700 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic004G047200--Sobic002G014400 Sobic001G008500 Sobic001G008500 Sobic004G047200--Sobic001G008500 Sobic004G047200--Sobic005G163700 Sobic001G530800 Sobic001G530800 Sobic004G047200--Sobic001G530800 Sobic004G047200--Sobic004G215700 Sobic004G047200--Sobic001G460500 Sobic001G371100 Sobic001G371100 Sobic004G047200--Sobic001G371100 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic001G460500--Sobic002G014400 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic001G460500--Sobic004G047200 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic001G460500--Sobic003G099300 Sobic007G120800 Sobic007G120800 Sobic002G194800--Sobic007G120800 Sobic001G010700 Sobic001G010700 Sobic002G194800--Sobic001G010700 Sobic003G428200 Sobic003G428200 Sobic002G194800--Sobic003G428200 Sobic002G194800--Sobic009G105900 Sobic002G194800--Sobic002G029300 Sobic007G065500 Sobic007G065500 Sobic002G194800--Sobic007G065500 Sobic009G139800 Sobic009G139800 Sobic002G194800--Sobic009G139800 Sobic001G432300 Sobic001G432300 Sobic002G194800--Sobic001G432300 Sobic003G092700 Sobic003G092700 Sobic002G194800--Sobic003G092700
Octagon: transcription factors


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