Gene annotation
Transcriptome id Sobic.002G327000.1,Sobic.002G327000.2
Synonym Sb02g035390, VLN4, ATVLN4
Functional annotation villin protein, putative, expressed
UniProt A0A1B6QEP6
Pfam PF00626 PF02209
Panther DB PTHR11977:SF47 PTHR11977
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003779; actin binding GO:0007010cytoskeleton organization


Orthologs (automatic annotation)
TAIR AT4G30160 : villin 4
RAP-DB (Rice) LOC_Os04g51440.1,LOC_Os04g51440.2 : villin protein, putative, expressed
MaizeGDB (Corn) Zm00025a048286 , Zm00025a031564 , Zm00025a007710 , Zm00025a014846 , Zm00025a048031 , Zm00025a052102 , Zm00025a029813 , Zm00025a045139
Brachypodium KQJ84416 , KQJ95724 , KQJ95723
Barley HORVU2Hr1G101190.8 , HORVU2Hr1G101190.9 , HORVU2Hr1G101190.6 , HORVU2Hr1G101190.7 , HORVU2Hr1G101190.4 , HORVU2Hr1G101190.5 , HORVU2Hr1G101190.2 , HORVU2Hr1G101190.3 , HORVU2Hr1G101190.1 , HORVU2Hr1G101190.10 , HORVU2Hr1G101190.11 , HORVU2Hr1G101190.12 , HORVU2Hr1G101190.13
Wheat TraesCS2B02G455700 , TraesCS2B02G455700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G344901 - K10357: myosin V
2 Sobic.003G144300 expressed protein -
3 Sobic.009G105900 amino acid permease family protein, putative, expressed K14427: SLC12A4_6, solute carrier family 12 (potassium/chloride transporter), member 4/6
4 Sobic.008G124800 expressed protein -
5 Sobic.001G426600 SH3 domain containing protein, expressed -
6 Sobic.003G227100 adaptin, putative, expressed -
7 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
8 Sobic.001G163400 roothairless 1, putative, expressed -
9 Sobic.001G051700 expressed protein -
10 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
11 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
12 Sobic.001G127200 zinc finger family protein, putative, expressed -
13 Sobic.008G003700 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
14 Sobic.004G145000 importin-8, putative, expressed -
15 Sobic.007G051700 lissencephaly type-1-like homology motif, putative, expressed -
16 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
17 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
18 Sobic.006G137700 Spc97 / Spc98 family protein, putative, expressed K16569: TUBGCP2, gamma-tubulin complex component 2
19 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
20 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205


Gene co-expression network
sample Sobic002G327000 Sobic002G327000 Sobic004G344901 Sobic004G344901 Sobic002G327000--Sobic004G344901 Sobic003G144300 Sobic003G144300 Sobic002G327000--Sobic003G144300 Sobic009G105900 Sobic009G105900 Sobic002G327000--Sobic009G105900 Sobic008G124800 Sobic008G124800 Sobic002G327000--Sobic008G124800 Sobic001G426600 Sobic001G426600 Sobic002G327000--Sobic001G426600 Sobic003G227100 Sobic003G227100 Sobic002G327000--Sobic003G227100 Sobic003G337300 Sobic003G337300 Sobic002G327000--Sobic003G337300 Sobic001G163400 Sobic001G163400 Sobic002G327000--Sobic001G163400 Sobic001G051700 Sobic001G051700 Sobic002G327000--Sobic001G051700 Sobic003G331400 Sobic003G331400 Sobic004G344901--Sobic003G331400 Sobic004G344901--Sobic003G337300 Sobic004G344901--Sobic001G163400 Sobic006G131000 Sobic006G131000 Sobic004G344901--Sobic006G131000 Sobic004G004300 Sobic004G004300 Sobic004G344901--Sobic004G004300 Sobic001G415300 Sobic001G415300 Sobic004G344901--Sobic001G415300 Sobic008G003700 Sobic008G003700 Sobic004G344901--Sobic008G003700 Sobic001G281100 Sobic001G281100 Sobic004G344901--Sobic001G281100 Sobic002G137400 Sobic002G137400 Sobic004G344901--Sobic002G137400 Sobic004G256500 Sobic004G256500 Sobic003G144300--Sobic004G256500 Sobic003G294600 Sobic003G294600 Sobic003G144300--Sobic003G294600 Sobic003G144300--Sobic002G327000 Sobic002G179400 Sobic002G179400 Sobic003G144300--Sobic002G179400 Sobic007G168300 Sobic007G168300 Sobic003G144300--Sobic007G168300 Sobic003G144300--Sobic008G124800 Sobic007G019300 Sobic007G019300 Sobic003G144300--Sobic007G019300 Sobic004G085000 Sobic004G085000 Sobic003G144300--Sobic004G085000 Sobic001G453000 Sobic001G453000 Sobic003G144300--Sobic001G453000 Sobic009G105900--Sobic002G327000 Sobic002G423500 Sobic002G423500 Sobic009G105900--Sobic002G423500 Sobic006G056200 Sobic006G056200 Sobic009G105900--Sobic006G056200 Sobic007G010900 Sobic007G010900 Sobic009G105900--Sobic007G010900 Sobic006G173200 Sobic006G173200 Sobic009G105900--Sobic006G173200 Sobic005G163700 Sobic005G163700 Sobic009G105900--Sobic005G163700 Sobic004G047200 Sobic004G047200 Sobic009G105900--Sobic004G047200 Sobic001G460500 Sobic001G460500 Sobic009G105900--Sobic001G460500 Sobic002G194800 Sobic002G194800 Sobic009G105900--Sobic002G194800 Sobic002G340900 Sobic002G340900 Sobic008G124800--Sobic002G340900 Sobic006G021700 Sobic006G021700 Sobic008G124800--Sobic006G021700 Sobic008G124800--Sobic007G019300 Sobic004G322400 Sobic004G322400 Sobic008G124800--Sobic004G322400 Sobic001G404600 Sobic001G404600 Sobic008G124800--Sobic001G404600 Sobic003G233400 Sobic003G233400 Sobic008G124800--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic008G124800--Sobic002G308500 Sobic003G405500 Sobic003G405500 Sobic008G124800--Sobic003G405500 Sobic002G401500 Sobic002G401500 Sobic008G124800--Sobic002G401500 Sobic001G534800 Sobic001G534800 Sobic001G426600--Sobic001G534800 Sobic001G170100 Sobic001G170100 Sobic001G426600--Sobic001G170100 Sobic009G049400 Sobic009G049400 Sobic001G426600--Sobic009G049400 Sobic001G369000 Sobic001G369000 Sobic001G426600--Sobic001G369000 Sobic010G275500 Sobic010G275500 Sobic001G426600--Sobic010G275500 Sobic001G287500 Sobic001G287500 Sobic001G426600--Sobic001G287500 Sobic001G426600--Sobic007G019300 Sobic004G039600 Sobic004G039600 Sobic001G426600--Sobic004G039600 Sobic004G051200 Sobic004G051200 Sobic001G426600--Sobic004G051200 Sobic006G224800 Sobic006G224800 Sobic003G227100--Sobic006G224800 Sobic005G110499 Sobic005G110499 Sobic003G227100--Sobic005G110499 Sobic003G240700 Sobic003G240700 Sobic003G227100--Sobic003G240700 Sobic003G227100--Sobic001G369000 Sobic003G050900 Sobic003G050900 Sobic003G227100--Sobic003G050900 Sobic004G261600 Sobic004G261600 Sobic003G227100--Sobic004G261600 Sobic008G040700 Sobic008G040700 Sobic003G227100--Sobic008G040700 Sobic003G227100--Sobic006G056200 Sobic003G209200 Sobic003G209200 Sobic003G227100--Sobic003G209200 Sobic003G104000 Sobic003G104000 Sobic003G337300--Sobic003G104000 Sobic010G004100 Sobic010G004100 Sobic003G337300--Sobic010G004100 Sobic003G337300--Sobic002G137400 Sobic003G337300--Sobic004G039600 Sobic003G337300--Sobic006G131000 Sobic003G337300--Sobic004G344901 Sobic003G337300--Sobic004G322400 Sobic003G332500 Sobic003G332500 Sobic003G337300--Sobic003G332500 Sobic003G337300--Sobic001G415300 Sobic001G163400--Sobic004G344901 Sobic001G163400--Sobic003G337300 Sobic001G015800 Sobic001G015800 Sobic001G163400--Sobic001G015800 Sobic001G163400--Sobic006G131000 Sobic001G163400--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic001G163400--Sobic001G096000 Sobic001G163400--Sobic001G415300 Sobic001G124200 Sobic001G124200 Sobic001G163400--Sobic001G124200 Sobic006G163800 Sobic006G163800 Sobic001G163400--Sobic006G163800 Sobic003G416700 Sobic003G416700 Sobic001G051700--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G051700--Sobic002G145800 Sobic006G267600 Sobic006G267600 Sobic001G051700--Sobic006G267600 Sobic002G154000 Sobic002G154000 Sobic001G051700--Sobic002G154000 Sobic006G261400 Sobic006G261400 Sobic001G051700--Sobic006G261400 Sobic001G051700--Sobic006G224800 Sobic007G183300 Sobic007G183300 Sobic001G051700--Sobic007G183300 Sobic001G051700--Sobic010G275500 Sobic003G062300 Sobic003G062300 Sobic001G051700--Sobic003G062300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.