Gene annotation
Transcriptome id Sobic.001G127200.1
Synonym Sb01g011150
Functional annotation zinc finger family protein, putative, expressed
UniProt C5WNW0
Pfam PF00642 PF13637
Panther DB PTHR14493 PTHR14493:SF47
NCBI CDD KOG1595; CCCH-type Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41900 : CCCH-type zinc finger protein with ARM repeat domain
RAP-DB (Rice) LOC_Os03g49170.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a017063 , Zm00025a007706
Brachypodium KQK13674
Barley HORVU4Hr1G005770.3 , HORVU4Hr1G005770.2 , HORVU4Hr1G005770.1 , HORVU4Hr1G005770.4
Wheat TraesCS4D02G034300
Populus -


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cDNA sequences
Sobic.001G127200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G261600 expressed protein -
2 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
3 Sobic.001G415300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
4 Sobic.010G004100 expressed protein -
5 Sobic.002G031100 resistance protein LR10, putative, expressed -
6 Sobic.002G137400 protein binding protein, putative, expressed -
7 Sobic.004G344901 - K10357: myosin V
8 Sobic.004G358400 callose synthase-like enzyme(PubMedID : 25311645)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
9 Sobic.003G227100 adaptin, putative, expressed -
10 Sobic.007G051700 lissencephaly type-1-like homology motif, putative, expressed -
11 Sobic.003G331400 expressed protein -
12 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
13 Sobic.004G002100 G-protein alpha subunit, putative, expressed -
14 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
15 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
16 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
17 Sobic.004G257200 phosphatidylinositol transfer, putative, expressed -
18 Sobic.003G036800 WD domain, G-beta repeat domain containing protein, expressed K10260: FBXW7, F-box and WD-40 domain protein 7
19 Sobic.003G194100 mitochondrial carrier protein, putative, expressed K15084: SLC25A16, GDA, solute carrier family 25 (mitochondrial carrier protein), member 16
20 Sobic.004G004300 expressed protein -


Gene co-expression network
sample Sobic001G127200 Sobic001G127200 Sobic004G261600 Sobic004G261600 Sobic001G127200--Sobic004G261600 Sobic003G104000 Sobic003G104000 Sobic001G127200--Sobic003G104000 Sobic001G415300 Sobic001G415300 Sobic001G127200--Sobic001G415300 Sobic010G004100 Sobic010G004100 Sobic001G127200--Sobic010G004100 Sobic002G031100 Sobic002G031100 Sobic001G127200--Sobic002G031100 Sobic002G137400 Sobic002G137400 Sobic001G127200--Sobic002G137400 Sobic004G344901 Sobic004G344901 Sobic001G127200--Sobic004G344901 Sobic004G358400 Sobic004G358400 Sobic001G127200--Sobic004G358400 Sobic003G227100 Sobic003G227100 Sobic001G127200--Sobic003G227100 Sobic004G228800 Sobic004G228800 Sobic004G261600--Sobic004G228800 Sobic006G126100 Sobic006G126100 Sobic004G261600--Sobic006G126100 Sobic003G209200 Sobic003G209200 Sobic004G261600--Sobic003G209200 Sobic004G261600--Sobic003G104000 Sobic007G005500 Sobic007G005500 Sobic004G261600--Sobic007G005500 Sobic001G251200 Sobic001G251200 Sobic004G261600--Sobic001G251200 Sobic004G261600--Sobic001G415300 Sobic004G004300 Sobic004G004300 Sobic004G261600--Sobic004G004300 Sobic008G099800 Sobic008G099800 Sobic004G261600--Sobic008G099800 Sobic003G337300 Sobic003G337300 Sobic003G104000--Sobic003G337300 Sobic002G256700 Sobic002G256700 Sobic003G104000--Sobic002G256700 Sobic003G104000--Sobic006G126100 Sobic001G251100 Sobic001G251100 Sobic003G104000--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic004G131300 Sobic004G131300 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic001G415300--Sobic002G137400 Sobic001G415300--Sobic004G004300 Sobic001G281100 Sobic001G281100 Sobic001G415300--Sobic001G281100 Sobic001G085300 Sobic001G085300 Sobic001G415300--Sobic001G085300 Sobic001G415300--Sobic003G337300 Sobic001G415300--Sobic006G126100 Sobic001G534800 Sobic001G534800 Sobic001G415300--Sobic001G534800 Sobic004G002100 Sobic004G002100 Sobic001G415300--Sobic004G002100 Sobic001G457900 Sobic001G457900 Sobic001G415300--Sobic001G457900 Sobic007G163100 Sobic007G163100 Sobic010G004100--Sobic007G163100 Sobic001G117200 Sobic001G117200 Sobic010G004100--Sobic001G117200 Sobic010G004100--Sobic002G137400 Sobic010G004100--Sobic003G337300 Sobic010G004100--Sobic003G104000 Sobic004G113400 Sobic004G113400 Sobic010G004100--Sobic004G113400 Sobic003G408600 Sobic003G408600 Sobic010G004100--Sobic003G408600 Sobic010G004100--Sobic004G004300 Sobic010G004100--Sobic001G415300 Sobic002G031100--Sobic004G002100 Sobic002G031100--Sobic002G137400 Sobic002G031100--Sobic001G415300 Sobic003G331400 Sobic003G331400 Sobic002G031100--Sobic003G331400 Sobic002G031100--Sobic004G261600 Sobic010G093100 Sobic010G093100 Sobic002G031100--Sobic010G093100 Sobic002G031100--Sobic001G127200 Sobic002G031100--Sobic001G281100 Sobic002G031100--Sobic004G344901 Sobic002G137400--Sobic001G415300 Sobic002G137400--Sobic004G002100 Sobic002G137400--Sobic010G004100 Sobic002G137400--Sobic003G337300 Sobic002G137400--Sobic003G331400 Sobic002G137400--Sobic001G281100 Sobic002G137400--Sobic004G004300 Sobic002G137400--Sobic001G534800 Sobic002G137400--Sobic002G031100 Sobic004G344901--Sobic003G331400 Sobic004G344901--Sobic003G337300 Sobic001G163400 Sobic001G163400 Sobic004G344901--Sobic001G163400 Sobic006G131000 Sobic006G131000 Sobic004G344901--Sobic006G131000 Sobic004G344901--Sobic004G004300 Sobic004G344901--Sobic001G415300 Sobic008G003700 Sobic008G003700 Sobic004G344901--Sobic008G003700 Sobic004G344901--Sobic001G281100 Sobic004G344901--Sobic002G137400 Sobic004G358400--Sobic004G004300 Sobic005G026200 Sobic005G026200 Sobic004G358400--Sobic005G026200 Sobic004G358400--Sobic001G281100 Sobic010G275500 Sobic010G275500 Sobic004G358400--Sobic010G275500 Sobic004G358400--Sobic001G534800 Sobic004G358400--Sobic003G331400 Sobic004G358400--Sobic004G344901 Sobic001G196500 Sobic001G196500 Sobic004G358400--Sobic001G196500 Sobic004G358400--Sobic001G251200 Sobic006G224800 Sobic006G224800 Sobic003G227100--Sobic006G224800 Sobic005G110499 Sobic005G110499 Sobic003G227100--Sobic005G110499 Sobic003G240700 Sobic003G240700 Sobic003G227100--Sobic003G240700 Sobic001G369000 Sobic001G369000 Sobic003G227100--Sobic001G369000 Sobic003G050900 Sobic003G050900 Sobic003G227100--Sobic003G050900 Sobic003G227100--Sobic004G261600 Sobic008G040700 Sobic008G040700 Sobic003G227100--Sobic008G040700 Sobic006G056200 Sobic006G056200 Sobic003G227100--Sobic006G056200 Sobic003G227100--Sobic003G209200
Octagon: transcription factors


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