Gene annotation
Transcriptome id Sobic.007G051700.1
Synonym WSIP1, Sb07g004180, TPL
Functional annotation lissencephaly type-1-like homology motif, putative, expressed
UniProt A0A1B6PFN9 , I2AW70
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF441
NCBI CDD KOG0266; WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G15750 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os08g06480.1 : lissencephaly type-1-like homology motif, putative, expressed
MaizeGDB (Corn) Zm00025a001623 , Zm00025a055098
Brachypodium KQJ95284
Barley HORVU7Hr1G066930.11 , HORVU7Hr1G066930.10 , HORVU7Hr1G066930.13 , HORVU7Hr1G066930.12 , HORVU7Hr1G066930.14 , HORVU0Hr1G008690.2 , HORVU7Hr1G022450.2 , HORVU7Hr1G022450.1 , HORVU0Hr1G008690.16 , HORVU0Hr1G008690.15 , HORVU0Hr1G008690.14 , HORVU0Hr1G008690.12 , HORVU0Hr1G008690.11 , HORVU0Hr1G008690.10 , HORVU7Hr1G066930.5 , HORVU7Hr1G066930.4 , HORVU7Hr1G066930.7 , HORVU7Hr1G066930.6 , HORVU7Hr1G066930.1 , HORVU7Hr1G066930.3 , HORVU7Hr1G066930.2 , HORVU7Hr1G066930.9 , HORVU7Hr1G066930.8 , HORVU0Hr1G008690.7 , HORVU0Hr1G008690.6 , HORVU0Hr1G008690.5 , HORVU0Hr1G008690.4 , HORVU0Hr1G008690.3 , HORVU0Hr1G008690.1 , HORVU0Hr1G008690.8
Wheat TraesCS7B02G189300 , TraesCS7B02G189300 , TraesCS7B02G189300 , TraesCS7B02G189300 , TraesCS7B02G189300 , TraesCS7B02G189300 , TraesCS4D02G221200 , TraesCS4D02G221200 , TraesCS7B02G189300 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS7A02G296100 , TraesCS4A02G083300 , TraesCS4A02G083300 , TraesCS4A02G083300 , TraesCS4B02G220900 , TraesCS4B02G220900 , TraesCS4B02G220900 , TraesCS4B02G220900 , TraesCS4A02G083300 , TraesCS4A02G083300 , TraesCS4A02G083300 , TraesCS4A02G083300 , TraesCS7D02G293500 , TraesCS7D02G293500 , TraesCS7D02G293500
Populus PNT55585 , PNT55587 , PNT55586 , PNT55589 , PNT55588 , PNT43357


JBrowse

Open New Page


cDNA sequences
Sobic.007G051700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G384000 expressed protein -
2 Sobic.001G127200 zinc finger family protein, putative, expressed -
3 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
4 Sobic.004G149700 SEY1, putative, expressed -
5 Sobic.001G196500 plus-3 domain containing protein, putative, expressed -
6 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
7 Sobic.003G144300 expressed protein -
8 Sobic.002G295500 expressed protein -
9 Sobic.002G327000 villin protein, putative, expressed -
10 Sobic.004G135400 expressed protein -
11 Sobic.001G415300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
12 Sobic.010G148932 - -
13 Sobic.002G179400 DNA binding protein, putative, expressed -
14 Sobic.004G147500 tetratricopeptide repeat domain containing protein, expressed K09667: protein O-GlcNAc transferase
15 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
16 Sobic.001G457900 expressed protein -
17 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
18 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
19 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
20 Sobic.004G223300 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein


Gene co-expression network
sample Sobic007G051700 Sobic007G051700 Sobic001G384000 Sobic001G384000 Sobic007G051700--Sobic001G384000 Sobic001G127200 Sobic001G127200 Sobic007G051700--Sobic001G127200 Sobic007G168300 Sobic007G168300 Sobic007G051700--Sobic007G168300 Sobic004G149700 Sobic004G149700 Sobic007G051700--Sobic004G149700 Sobic001G196500 Sobic001G196500 Sobic007G051700--Sobic001G196500 Sobic003G104000 Sobic003G104000 Sobic007G051700--Sobic003G104000 Sobic003G144300 Sobic003G144300 Sobic007G051700--Sobic003G144300 Sobic002G295500 Sobic002G295500 Sobic007G051700--Sobic002G295500 Sobic002G327000 Sobic002G327000 Sobic007G051700--Sobic002G327000 Sobic005G200900 Sobic005G200900 Sobic001G384000--Sobic005G200900 Sobic001G384000--Sobic001G196500 Sobic006G138000 Sobic006G138000 Sobic001G384000--Sobic006G138000 Sobic001G384000--Sobic007G168300 Sobic006G261400 Sobic006G261400 Sobic001G384000--Sobic006G261400 Sobic002G362800 Sobic002G362800 Sobic001G384000--Sobic002G362800 Sobic001G457900 Sobic001G457900 Sobic001G384000--Sobic001G457900 Sobic001G384000--Sobic007G051700 Sobic001G111600 Sobic001G111600 Sobic001G384000--Sobic001G111600 Sobic004G261600 Sobic004G261600 Sobic001G127200--Sobic004G261600 Sobic001G127200--Sobic003G104000 Sobic001G415300 Sobic001G415300 Sobic001G127200--Sobic001G415300 Sobic010G004100 Sobic010G004100 Sobic001G127200--Sobic010G004100 Sobic002G031100 Sobic002G031100 Sobic001G127200--Sobic002G031100 Sobic002G137400 Sobic002G137400 Sobic001G127200--Sobic002G137400 Sobic004G344901 Sobic004G344901 Sobic001G127200--Sobic004G344901 Sobic004G358400 Sobic004G358400 Sobic001G127200--Sobic004G358400 Sobic003G227100 Sobic003G227100 Sobic001G127200--Sobic003G227100 Sobic003G042400 Sobic003G042400 Sobic007G168300--Sobic003G042400 Sobic005G200800 Sobic005G200800 Sobic007G168300--Sobic005G200800 Sobic010G001100 Sobic010G001100 Sobic007G168300--Sobic010G001100 Sobic002G154000 Sobic002G154000 Sobic007G168300--Sobic002G154000 Sobic009G126300 Sobic009G126300 Sobic007G168300--Sobic009G126300 Sobic007G183300 Sobic007G183300 Sobic007G168300--Sobic007G183300 Sobic001G453000 Sobic001G453000 Sobic007G168300--Sobic001G453000 Sobic001G376900 Sobic001G376900 Sobic007G168300--Sobic001G376900 Sobic007G168300--Sobic005G200900 Sobic010G148932 Sobic010G148932 Sobic004G149700--Sobic010G148932 Sobic002G179400 Sobic002G179400 Sobic004G149700--Sobic002G179400 Sobic002G042600 Sobic002G042600 Sobic004G149700--Sobic002G042600 Sobic010G080700 Sobic010G080700 Sobic004G149700--Sobic010G080700 Sobic004G149700--Sobic001G376900 Sobic001G065100 Sobic001G065100 Sobic004G149700--Sobic001G065100 Sobic001G453400 Sobic001G453400 Sobic004G149700--Sobic001G453400 Sobic004G277200 Sobic004G277200 Sobic004G149700--Sobic004G277200 Sobic010G114900 Sobic010G114900 Sobic004G149700--Sobic010G114900 Sobic003G229500 Sobic003G229500 Sobic001G196500--Sobic003G229500 Sobic002G299700 Sobic002G299700 Sobic001G196500--Sobic002G299700 Sobic010G275500 Sobic010G275500 Sobic001G196500--Sobic010G275500 Sobic008G132600 Sobic008G132600 Sobic001G196500--Sobic008G132600 Sobic003G101400 Sobic003G101400 Sobic001G196500--Sobic003G101400 Sobic001G540400 Sobic001G540400 Sobic001G196500--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic001G196500--Sobic003G408600 Sobic002G397500 Sobic002G397500 Sobic001G196500--Sobic002G397500 Sobic001G196500--Sobic001G457900 Sobic003G337300 Sobic003G337300 Sobic003G104000--Sobic003G337300 Sobic002G256700 Sobic002G256700 Sobic003G104000--Sobic002G256700 Sobic006G126100 Sobic006G126100 Sobic003G104000--Sobic006G126100 Sobic001G251100 Sobic001G251100 Sobic003G104000--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic003G104000--Sobic002G142900 Sobic003G104000--Sobic002G295500 Sobic003G104000--Sobic004G277200 Sobic004G131300 Sobic004G131300 Sobic003G104000--Sobic004G131300 Sobic003G104000--Sobic006G261400 Sobic004G256500 Sobic004G256500 Sobic003G144300--Sobic004G256500 Sobic003G294600 Sobic003G294600 Sobic003G144300--Sobic003G294600 Sobic003G144300--Sobic002G327000 Sobic003G144300--Sobic002G179400 Sobic003G144300--Sobic007G168300 Sobic008G124800 Sobic008G124800 Sobic003G144300--Sobic008G124800 Sobic007G019300 Sobic007G019300 Sobic003G144300--Sobic007G019300 Sobic004G085000 Sobic004G085000 Sobic003G144300--Sobic004G085000 Sobic003G144300--Sobic001G453000 Sobic002G295500--Sobic003G104000 Sobic009G044800 Sobic009G044800 Sobic002G295500--Sobic009G044800 Sobic003G416700 Sobic003G416700 Sobic002G295500--Sobic003G416700 Sobic006G224800 Sobic006G224800 Sobic002G295500--Sobic006G224800 Sobic004G353000 Sobic004G353000 Sobic002G295500--Sobic004G353000 Sobic007G183900 Sobic007G183900 Sobic002G295500--Sobic007G183900 Sobic006G240100 Sobic006G240100 Sobic002G295500--Sobic006G240100 Sobic007G132100 Sobic007G132100 Sobic002G295500--Sobic007G132100 Sobic006G200700 Sobic006G200700 Sobic002G295500--Sobic006G200700 Sobic002G327000--Sobic004G344901 Sobic002G327000--Sobic003G144300 Sobic009G105900 Sobic009G105900 Sobic002G327000--Sobic009G105900 Sobic002G327000--Sobic008G124800 Sobic001G426600 Sobic001G426600 Sobic002G327000--Sobic001G426600 Sobic002G327000--Sobic003G227100 Sobic002G327000--Sobic003G337300 Sobic001G163400 Sobic001G163400 Sobic002G327000--Sobic001G163400 Sobic001G051700 Sobic001G051700 Sobic002G327000--Sobic001G051700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.