Gene annotation
Transcriptome id Sobic.001G163400.1
Synonym Sb01g014290, SEC3A
Functional annotation roothairless 1, putative, expressed
UniProt C5WS71
Pfam PF15277 PF04129
Panther DB PTHR16092:SF21 PTHR16092
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47550 : exocyst complex component sec3A
RAP-DB (Rice) LOC_Os03g42750.1 : roothairless 1, putative, expressed
MaizeGDB (Corn) Zm00025a007378
Brachypodium KQK14130 , PNT74412 , PNT74413
Barley HORVU7Hr1G058980.2 , HORVU4Hr1G011940.9 , HORVU4Hr1G011940.8 , HORVU4Hr1G011940.1 , HORVU4Hr1G011940.3 , HORVU4Hr1G011940.2 , HORVU4Hr1G011940.5 , HORVU4Hr1G011940.4 , HORVU4Hr1G011940.7 , HORVU4Hr1G011940.6 , HORVU0Hr1G026430.2 , HORVU3Hr1G050870.9 , HORVU3Hr1G050870.8 , HORVU3Hr1G050870.1 , HORVU3Hr1G050870.2 , HORVU3Hr1G050870.5 , HORVU3Hr1G050870.7 , HORVU3Hr1G050870.6 , HORVU4Hr1G011940.11 , HORVU4Hr1G011940.10 , HORVU4Hr1G011940.12 , HORVU3Hr1G050870.3 , HORVU3Hr1G050870.19 , HORVU3Hr1G050870.18 , HORVU3Hr1G050870.15 , HORVU3Hr1G050870.14 , HORVU3Hr1G050870.17 , HORVU3Hr1G050870.16 , HORVU3Hr1G050870.10
Wheat TraesCS4D02G070700 , TraesCS4B02G072000 , TraesCS4B02G072000 , TraesCS4A02G243100 , TraesCS4A02G243100 , TraesCS4A02G243100
Populus -


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cDNA sequences
Sobic.001G163400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G344901 - K10357: myosin V
2 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
3 Sobic.001G015800 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
4 Sobic.006G131000 expressed protein K11968: ariadne-1
5 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
6 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
7 Sobic.001G415300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
8 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
9 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
10 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
11 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
12 Sobic.002G137400 protein binding protein, putative, expressed -
13 Sobic.010G275500 EF hand family protein, putative, expressed -
14 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
15 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
16 Sobic.002G299000 ribonuclease 2-5A family protein, expressed -
17 Sobic.006G126900 OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
18 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
19 Sobic.001G193000 STE_PAK_Ste20_STLK.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
20 Sobic.003G331400 expressed protein -


Gene co-expression network
sample Sobic001G163400 Sobic001G163400 Sobic004G344901 Sobic004G344901 Sobic001G163400--Sobic004G344901 Sobic003G337300 Sobic003G337300 Sobic001G163400--Sobic003G337300 Sobic001G015800 Sobic001G015800 Sobic001G163400--Sobic001G015800 Sobic006G131000 Sobic006G131000 Sobic001G163400--Sobic006G131000 Sobic004G039600 Sobic004G039600 Sobic001G163400--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic001G163400--Sobic001G096000 Sobic001G415300 Sobic001G415300 Sobic001G163400--Sobic001G415300 Sobic001G124200 Sobic001G124200 Sobic001G163400--Sobic001G124200 Sobic006G163800 Sobic006G163800 Sobic001G163400--Sobic006G163800 Sobic003G331400 Sobic003G331400 Sobic004G344901--Sobic003G331400 Sobic004G344901--Sobic003G337300 Sobic004G344901--Sobic001G163400 Sobic004G344901--Sobic006G131000 Sobic004G004300 Sobic004G004300 Sobic004G344901--Sobic004G004300 Sobic004G344901--Sobic001G415300 Sobic008G003700 Sobic008G003700 Sobic004G344901--Sobic008G003700 Sobic001G281100 Sobic001G281100 Sobic004G344901--Sobic001G281100 Sobic002G137400 Sobic002G137400 Sobic004G344901--Sobic002G137400 Sobic003G104000 Sobic003G104000 Sobic003G337300--Sobic003G104000 Sobic010G004100 Sobic010G004100 Sobic003G337300--Sobic010G004100 Sobic003G337300--Sobic002G137400 Sobic003G337300--Sobic004G039600 Sobic003G337300--Sobic006G131000 Sobic003G337300--Sobic004G344901 Sobic004G322400 Sobic004G322400 Sobic003G337300--Sobic004G322400 Sobic003G332500 Sobic003G332500 Sobic003G337300--Sobic003G332500 Sobic003G337300--Sobic001G415300 Sobic001G015800--Sobic001G163400 Sobic008G124900 Sobic008G124900 Sobic001G015800--Sobic008G124900 Sobic001G015800--Sobic003G104000 Sobic001G015800--Sobic003G331400 Sobic006G033200 Sobic006G033200 Sobic001G015800--Sobic006G033200 Sobic004G286500 Sobic004G286500 Sobic001G015800--Sobic004G286500 Sobic002G134600 Sobic002G134600 Sobic001G015800--Sobic002G134600 Sobic001G015800--Sobic001G096000 Sobic001G015800--Sobic003G337300 Sobic007G218000 Sobic007G218000 Sobic006G131000--Sobic007G218000 Sobic007G132100 Sobic007G132100 Sobic006G131000--Sobic007G132100 Sobic006G131000--Sobic006G163800 Sobic006G131000--Sobic004G039600 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic010G275500 Sobic010G275500 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic004G178200 Sobic004G178200 Sobic006G131000--Sobic004G178200 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic001G096000--Sobic006G131000 Sobic001G096000--Sobic008G124900 Sobic001G096000--Sobic006G126100 Sobic001G096000--Sobic003G332500 Sobic001G096000--Sobic003G104000 Sobic001G096000--Sobic003G337300 Sobic001G477700 Sobic001G477700 Sobic001G096000--Sobic001G477700 Sobic001G096000--Sobic001G163400 Sobic001G362200 Sobic001G362200 Sobic001G096000--Sobic001G362200 Sobic001G415300--Sobic002G137400 Sobic001G415300--Sobic004G004300 Sobic001G415300--Sobic001G281100 Sobic001G085300 Sobic001G085300 Sobic001G415300--Sobic001G085300 Sobic001G415300--Sobic003G337300 Sobic001G415300--Sobic006G126100 Sobic001G415300--Sobic001G534800 Sobic004G002100 Sobic004G002100 Sobic001G415300--Sobic004G002100 Sobic001G457900 Sobic001G457900 Sobic001G415300--Sobic001G457900 Sobic010G205800 Sobic010G205800 Sobic001G124200--Sobic010G205800 Sobic010G020300 Sobic010G020300 Sobic001G124200--Sobic010G020300 Sobic003G155900 Sobic003G155900 Sobic001G124200--Sobic003G155900 Sobic001G124200--Sobic004G039600 Sobic010G278200 Sobic010G278200 Sobic001G124200--Sobic010G278200 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G390800 Sobic001G390800 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700 Sobic010G204400 Sobic010G204400 Sobic006G163800--Sobic010G204400 Sobic006G163800--Sobic001G369000 Sobic006G163800--Sobic006G131000 Sobic006G163800--Sobic010G053800 Sobic006G163800--Sobic007G218000 Sobic006G163800--Sobic010G275500 Sobic006G163800--Sobic006G012500 Sobic006G163800--Sobic004G039600 Sobic004G146500 Sobic004G146500 Sobic006G163800--Sobic004G146500
Octagon: transcription factors


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