Gene annotation
Transcriptome id Sobic.006G126900.1
Synonym Sb06g020700
Functional annotation OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed
UniProt C5YAX6
Pfam PF04096
Panther DB PTHR23198 PTHR23198:SF4
NCBI CDD KOG0845; Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116)
KEGG Orthology K14297; NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
Gene Ontology GO:0006810; transport GO:0005643nuclear pore


Orthologs (automatic annotation)
TAIR AT1G10390 : Nucleoporin autopeptidase
RAP-DB (Rice) LOC_Os12g06890.1 : OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a028897 , Zm00025a015331
Brachypodium KQJ89587 , KQJ89624 , KQK03627
Barley HORVU3Hr1G000700.4 , HORVU3Hr1G034780.1 , HORVU3Hr1G034780.3 , HORVU3Hr1G034780.2 , HORVU3Hr1G034780.5 , HORVU3Hr1G034780.4 , HORVU3Hr1G034780.7 , HORVU3Hr1G034780.6 , HORVU3Hr1G034780.9 , HORVU3Hr1G034780.8
Wheat TraesCS3D02G178700 , TraesCS3B02G203000 , TraesCS4B02G137800 , TraesCS4B02G137800 , TraesCS3B02G203000 , TraesCS3B02G203000 , TraesCS3B02G203000 , TraesCS3B02G203000 , TraesCS4B02G137800 , TraesCS3D02G178700 , TraesCS3D02G178700 , TraesCS3D02G178700 , TraesCS4A02G177800 , TraesCS4A02G177800 , TraesCS4A02G177800 , TraesCS4A02G177800 , TraesCS4A02G177800 , TraesCS4D02G132600 , TraesCS4D02G132600 , TraesCS4D02G132600 , TraesCS4D02G132600 , TraesCS4D02G132600 , TraesCS3A02G172200 , TraesCS3A02G172200 , TraesCS3A02G172200 , TraesCS3A02G172200
Populus -


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cDNA sequences
Sobic.006G126900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
2 Sobic.002G264200 RNA recognition motif containing protein, expressed -
3 Sobic.002G034600 zinc ion binding protein, putative, expressed -
4 Sobic.009G195200 ESP1, putative, expressed -
5 Sobic.003G416700 homeobox domain containing protein, expressed -
6 Sobic.006G138000 expressed protein -
7 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
8 Sobic.006G118700 MYB family transcription factor, putative, expressed -
9 Sobic.010G069100 expressed protein -
10 Sobic.001G163400 roothairless 1, putative, expressed -
11 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
12 Sobic.007G183900 ubiquitin family protein, putative, expressed -
13 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
14 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
15 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
16 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
17 Sobic.003G212900 zinc ion binding protein, putative, expressed -
18 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
19 Sobic.002G288000 bromodomain domain containing protein, expressed K11723: bromodomain-containing protein 7
20 Sobic.006G008600 zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic006G126900 Sobic006G126900 Sobic007G119200 Sobic007G119200 Sobic006G126900--Sobic007G119200 Sobic002G264200 Sobic002G264200 Sobic006G126900--Sobic002G264200 Sobic002G034600 Sobic002G034600 Sobic006G126900--Sobic002G034600 Sobic009G195200 Sobic009G195200 Sobic006G126900--Sobic009G195200 Sobic003G416700 Sobic003G416700 Sobic006G126900--Sobic003G416700 Sobic006G138000 Sobic006G138000 Sobic006G126900--Sobic006G138000 Sobic007G225100 Sobic007G225100 Sobic006G126900--Sobic007G225100 Sobic006G118700 Sobic006G118700 Sobic006G126900--Sobic006G118700 Sobic010G069100 Sobic010G069100 Sobic006G126900--Sobic010G069100 Sobic007G119200--Sobic002G034600 Sobic004G146500 Sobic004G146500 Sobic007G119200--Sobic004G146500 Sobic008G153000 Sobic008G153000 Sobic007G119200--Sobic008G153000 Sobic001G109800 Sobic001G109800 Sobic007G119200--Sobic001G109800 Sobic007G041500 Sobic007G041500 Sobic007G119200--Sobic007G041500 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic002G264200--Sobic010G069100 Sobic002G264200--Sobic003G416700 Sobic001G461400 Sobic001G461400 Sobic002G264200--Sobic001G461400 Sobic002G264200--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic002G264200--Sobic010G236400 Sobic002G071500 Sobic002G071500 Sobic002G264200--Sobic002G071500 Sobic007G065400 Sobic007G065400 Sobic002G264200--Sobic007G065400 Sobic002G153700 Sobic002G153700 Sobic002G264200--Sobic002G153700 Sobic002G264200--Sobic006G118700 Sobic009G198100 Sobic009G198100 Sobic002G034600--Sobic009G198100 Sobic002G034600--Sobic007G119200 Sobic003G081000 Sobic003G081000 Sobic002G034600--Sobic003G081000 Sobic001G473600 Sobic001G473600 Sobic002G034600--Sobic001G473600 Sobic003G355000 Sobic003G355000 Sobic002G034600--Sobic003G355000 Sobic007G118200 Sobic007G118200 Sobic002G034600--Sobic007G118200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic002G034600--Sobic010G236400 Sobic002G259800 Sobic002G259800 Sobic009G195200--Sobic002G259800 Sobic003G433500 Sobic003G433500 Sobic009G195200--Sobic003G433500 Sobic006G267300 Sobic006G267300 Sobic009G195200--Sobic006G267300 Sobic009G195200--Sobic002G264200 Sobic001G246500 Sobic001G246500 Sobic009G195200--Sobic001G246500 Sobic009G195200--Sobic003G355000 Sobic007G091600 Sobic007G091600 Sobic009G195200--Sobic007G091600 Sobic001G306900 Sobic001G306900 Sobic009G195200--Sobic001G306900 Sobic001G226000 Sobic001G226000 Sobic009G195200--Sobic001G226000 Sobic002G154000 Sobic002G154000 Sobic003G416700--Sobic002G154000 Sobic003G416700--Sobic002G264200 Sobic003G416700--Sobic001G461400 Sobic007G183900 Sobic007G183900 Sobic003G416700--Sobic007G183900 Sobic001G051700 Sobic001G051700 Sobic003G416700--Sobic001G051700 Sobic003G360400 Sobic003G360400 Sobic003G416700--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic003G416700--Sobic009G119000 Sobic001G063700 Sobic001G063700 Sobic003G416700--Sobic001G063700 Sobic010G275500 Sobic010G275500 Sobic003G416700--Sobic010G275500 Sobic001G170100 Sobic001G170100 Sobic006G138000--Sobic001G170100 Sobic001G518400 Sobic001G518400 Sobic006G138000--Sobic001G518400 Sobic001G335900 Sobic001G335900 Sobic006G138000--Sobic001G335900 Sobic001G369000 Sobic001G369000 Sobic006G138000--Sobic001G369000 Sobic006G138000--Sobic010G275500 Sobic003G240700 Sobic003G240700 Sobic006G138000--Sobic003G240700 Sobic003G187500 Sobic003G187500 Sobic006G138000--Sobic003G187500 Sobic001G426600 Sobic001G426600 Sobic006G138000--Sobic001G426600 Sobic010G053800 Sobic010G053800 Sobic006G138000--Sobic010G053800 Sobic004G277200 Sobic004G277200 Sobic007G225100--Sobic004G277200 Sobic001G313700 Sobic001G313700 Sobic007G225100--Sobic001G313700 Sobic002G299000 Sobic002G299000 Sobic007G225100--Sobic002G299000 Sobic003G337300 Sobic003G337300 Sobic007G225100--Sobic003G337300 Sobic002G366400 Sobic002G366400 Sobic007G225100--Sobic002G366400 Sobic003G104000 Sobic003G104000 Sobic007G225100--Sobic003G104000 Sobic008G099800 Sobic008G099800 Sobic007G225100--Sobic008G099800 Sobic001G124200 Sobic001G124200 Sobic007G225100--Sobic001G124200 Sobic002G045600 Sobic002G045600 Sobic007G225100--Sobic002G045600 Sobic006G118700--Sobic007G183900 Sobic006G118700--Sobic002G264200 Sobic010G112100 Sobic010G112100 Sobic006G118700--Sobic010G112100 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic006G118700--Sobic010G069100 Sobic006G118700--Sobic002G366400 Sobic006G118700--Sobic010G236400 Sobic006G118700--Sobic007G091600 Sobic010G069100--Sobic002G071500 Sobic010G069100--Sobic002G264200 Sobic005G112300 Sobic005G112300 Sobic010G069100--Sobic005G112300 Sobic008G047800 Sobic008G047800 Sobic010G069100--Sobic008G047800 Sobic008G009700 Sobic008G009700 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic010G069100--Sobic004G146500 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500
Octagon: transcription factors


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