Gene annotation
Transcriptome id Sobic.006G008600.2
Synonym Sb06g000870
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1Z5RC94
Pfam PF00641
Panther DB PTHR23111 PTHR23111:SF37
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G17975 : zinc finger (Ran-binding) family protein
RAP-DB (Rice) LOC_Os04g02000.2 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a012204 , Zm00025a055450 , Zm00025a054499
Brachypodium PNT60595 , KQJ81642
Barley -
Wheat TraesCS2B02G046600 , TraesCS2D02G031900 , TraesCS2A02G032600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G008600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
2 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
3 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
4 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
5 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
6 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
7 Sobic.002G264200 RNA recognition motif containing protein, expressed -
8 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
9 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
10 Sobic.002G056701 - -
11 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
12 Sobic.003G155900 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
13 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
14 Sobic.001G515000 protein-S-isoprenylcysteine O-methyltransferase. tax, putative, expressed K00587: ICMT, protein-S-isoprenylcysteine O-methyltransferase
15 Sobic.003G187200 phox domain-containing protein, putative, expressed -
16 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
17 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
18 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
19 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein


Gene co-expression network
sample Sobic006G008600 Sobic006G008600 Sobic007G218000 Sobic007G218000 Sobic006G008600--Sobic007G218000 Sobic001G392300 Sobic001G392300 Sobic006G008600--Sobic001G392300 Sobic006G012500 Sobic006G012500 Sobic006G008600--Sobic006G012500 Sobic006G163800 Sobic006G163800 Sobic006G008600--Sobic006G163800 Sobic002G297200 Sobic002G297200 Sobic006G008600--Sobic002G297200 Sobic004G084300 Sobic004G084300 Sobic006G008600--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic006G008600--Sobic002G264200 Sobic004G146500 Sobic004G146500 Sobic006G008600--Sobic004G146500 Sobic008G047800 Sobic008G047800 Sobic006G008600--Sobic008G047800 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic001G392300--Sobic009G044800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic004G039600 Sobic004G039600 Sobic006G012500--Sobic004G039600 Sobic010G053800 Sobic010G053800 Sobic006G012500--Sobic010G053800 Sobic008G099800 Sobic008G099800 Sobic006G012500--Sobic008G099800 Sobic010G275500 Sobic010G275500 Sobic006G012500--Sobic010G275500 Sobic006G012500--Sobic004G072100 Sobic001G534800 Sobic001G534800 Sobic006G012500--Sobic001G534800 Sobic001G065000 Sobic001G065000 Sobic006G012500--Sobic001G065000 Sobic006G012500--Sobic007G132100 Sobic006G012500--Sobic007G218000 Sobic006G163800--Sobic010G204400 Sobic001G369000 Sobic001G369000 Sobic006G163800--Sobic001G369000 Sobic006G163800--Sobic006G131000 Sobic006G163800--Sobic010G053800 Sobic006G163800--Sobic007G218000 Sobic006G163800--Sobic010G275500 Sobic006G163800--Sobic006G012500 Sobic006G163800--Sobic004G039600 Sobic006G163800--Sobic004G146500 Sobic003G397800 Sobic003G397800 Sobic002G297200--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic002G297200--Sobic010G101800 Sobic001G512700 Sobic001G512700 Sobic002G297200--Sobic001G512700 Sobic002G297200--Sobic004G146500 Sobic002G297200--Sobic008G047800 Sobic001G109800 Sobic001G109800 Sobic002G297200--Sobic001G109800 Sobic001G155000 Sobic001G155000 Sobic002G297200--Sobic001G155000 Sobic001G205200 Sobic001G205200 Sobic002G297200--Sobic001G205200 Sobic002G006900 Sobic002G006900 Sobic002G297200--Sobic002G006900 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic004G084300--Sobic002G006900 Sobic010G236400 Sobic010G236400 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic010G069100 Sobic010G069100 Sobic002G264200--Sobic010G069100 Sobic003G416700 Sobic003G416700 Sobic002G264200--Sobic003G416700 Sobic001G461400 Sobic001G461400 Sobic002G264200--Sobic001G461400 Sobic008G153000 Sobic008G153000 Sobic002G264200--Sobic008G153000 Sobic002G264200--Sobic010G236400 Sobic002G071500 Sobic002G071500 Sobic002G264200--Sobic002G071500 Sobic007G065400 Sobic007G065400 Sobic002G264200--Sobic007G065400 Sobic002G153700 Sobic002G153700 Sobic002G264200--Sobic002G153700 Sobic006G118700 Sobic006G118700 Sobic002G264200--Sobic006G118700 Sobic004G146500--Sobic001G109800 Sobic004G146500--Sobic010G069100 Sobic004G146500--Sobic002G297200 Sobic007G119200 Sobic007G119200 Sobic004G146500--Sobic007G119200 Sobic004G274200 Sobic004G274200 Sobic004G146500--Sobic004G274200 Sobic001G220300 Sobic001G220300 Sobic004G146500--Sobic001G220300 Sobic004G146500--Sobic001G155000 Sobic002G034600 Sobic002G034600 Sobic004G146500--Sobic002G034600 Sobic004G146500--Sobic008G047800 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.