Gene annotation
Transcriptome id Sobic.001G369000.1
Synonym
Functional annotation adapitin protein, putative, expressed
UniProt C5WZP4 , C6JSG7 , A0A109NDA4
Pfam PF02883 PF09066 PF01602
Panther DB PTHR11134 PTHR11134:SF14
NCBI CDD -
KEGG Orthology K12392; AP-1 complex subunit beta-1
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT4G23460 : Adaptin family protein
RAP-DB (Rice) LOC_Os03g23950.1 : adapitin protein, putative, expressed
MaizeGDB (Corn) Zm00025a006005 , Zm00025a002506 , Zm00025a052354 , Zm00025a023455
Brachypodium KQK21654
Barley HORVU4Hr1G045980.17 , HORVU4Hr1G045980.8 , HORVU4Hr1G045980.9 , HORVU4Hr1G045980.4 , HORVU4Hr1G045980.5 , HORVU4Hr1G045980.6 , HORVU4Hr1G045980.7 , HORVU4Hr1G045980.1 , HORVU4Hr1G045980.2 , HORVU4Hr1G045980.3 , HORVU4Hr1G045980.23 , HORVU4Hr1G045980.13 , HORVU4Hr1G045980.25 , HORVU4Hr1G045980.24 , HORVU4Hr1G045980.22 , HORVU4Hr1G045980.21 , HORVU4Hr1G045980.20 , HORVU4Hr1G045980.18 , HORVU4Hr1G045980.14 , HORVU4Hr1G045980.15 , HORVU4Hr1G045980.12 , HORVU4Hr1G045980.10 , HORVU4Hr1G045980.19 , HORVU4Hr1G045980.16 , HORVU4Hr1G045980.11
Wheat TraesCS4D02G166700 , TraesCS4D02G166700 , TraesCS4B02G165000 , TraesCS4B02G165000 , TraesCS4B02G165000 , TraesCS4B02G165000 , TraesCS4B02G165000 , TraesCS4B02G165000 , TraesCS4D02G166700 , TraesCS4A02G166200 , TraesCS4A02G166200 , TraesCS4A02G166200
Populus -


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cDNA sequences
Sobic.001G369000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
2 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
3 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
4 Sobic.003G240700 peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed -
5 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
6 Sobic.006G138000 expressed protein -
7 Sobic.009G049400 "SRS3(Ortholog in rice:Kitagawa et al., 2010)"(PubMedID : 31659920)@ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
8 Sobic.001G426600 SH3 domain containing protein, expressed -
9 Sobic.009G229600 tRNA-binding arm, putative, expressed -
10 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
11 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.006G131000 expressed protein K11968: ariadne-1
13 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
14 Sobic.010G275500 EF hand family protein, putative, expressed -
15 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
16 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
17 Sobic.K004100 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.007G132100 myrosinase precursor, putative, expressed -
19 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
20 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'


Gene co-expression network
sample Sobic001G369000 Sobic001G369000 Sobic004G039600 Sobic004G039600 Sobic001G369000--Sobic004G039600 Sobic001G335900 Sobic001G335900 Sobic001G369000--Sobic001G335900 Sobic007G120500 Sobic007G120500 Sobic001G369000--Sobic007G120500 Sobic003G240700 Sobic003G240700 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic006G138000 Sobic006G138000 Sobic001G369000--Sobic006G138000 Sobic009G049400 Sobic009G049400 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic009G229600 Sobic009G229600 Sobic001G369000--Sobic009G229600 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic004G039600--Sobic007G120500 Sobic001G335900--Sobic001G369000 Sobic001G335900--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G335900--Sobic001G518400 Sobic001G170100 Sobic001G170100 Sobic001G335900--Sobic001G170100 Sobic001G335900--Sobic003G240700 Sobic001G335900--Sobic009G229600 Sobic001G335900--Sobic009G049400 Sobic001G335900--Sobic007G120500 SobicK004100 SobicK004100 Sobic001G335900--SobicK004100 Sobic007G120500--Sobic001G369000 Sobic007G120500--Sobic004G039600 Sobic007G120500--Sobic007G132100 Sobic007G120500--Sobic006G012500 Sobic003G057700 Sobic003G057700 Sobic007G120500--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic007G120500--Sobic003G249600 Sobic004G072100 Sobic004G072100 Sobic007G120500--Sobic004G072100 Sobic007G120500--Sobic010G053800 Sobic003G394200 Sobic003G394200 Sobic007G120500--Sobic003G394200 Sobic003G240700--Sobic001G369000 Sobic003G240700--Sobic001G335900 Sobic003G240700--Sobic001G170100 Sobic003G240700--Sobic006G138000 Sobic003G314700 Sobic003G314700 Sobic003G240700--Sobic003G314700 Sobic003G293000 Sobic003G293000 Sobic003G240700--Sobic003G293000 Sobic003G240700--Sobic009G049400 Sobic003G240700--Sobic001G426600 Sobic003G227100 Sobic003G227100 Sobic003G240700--Sobic003G227100 Sobic010G204400 Sobic010G204400 Sobic006G163800--Sobic010G204400 Sobic006G163800--Sobic001G369000 Sobic006G163800--Sobic006G131000 Sobic006G163800--Sobic010G053800 Sobic007G218000 Sobic007G218000 Sobic006G163800--Sobic007G218000 Sobic010G275500 Sobic010G275500 Sobic006G163800--Sobic010G275500 Sobic006G163800--Sobic006G012500 Sobic006G163800--Sobic004G039600 Sobic004G146500 Sobic004G146500 Sobic006G163800--Sobic004G146500 Sobic006G138000--Sobic001G170100 Sobic006G138000--Sobic001G518400 Sobic006G138000--Sobic001G335900 Sobic006G138000--Sobic001G369000 Sobic006G138000--Sobic010G275500 Sobic006G138000--Sobic003G240700 Sobic003G187500 Sobic003G187500 Sobic006G138000--Sobic003G187500 Sobic006G138000--Sobic001G426600 Sobic006G138000--Sobic010G053800 Sobic009G049400--Sobic001G369000 Sobic009G049400--Sobic009G229600 Sobic009G049400--Sobic001G426600 Sobic009G049400--Sobic003G394200 Sobic009G049400--Sobic001G335900 Sobic009G049400--Sobic006G163800 Sobic003G189600 Sobic003G189600 Sobic009G049400--Sobic003G189600 Sobic009G049400--Sobic004G039600 Sobic009G049400--Sobic003G240700 Sobic001G426600--Sobic001G534800 Sobic001G426600--Sobic001G170100 Sobic001G426600--Sobic009G049400 Sobic001G426600--Sobic001G369000 Sobic001G426600--Sobic010G275500 Sobic001G287500 Sobic001G287500 Sobic001G426600--Sobic001G287500 Sobic007G019300 Sobic007G019300 Sobic001G426600--Sobic007G019300 Sobic001G426600--Sobic004G039600 Sobic004G051200 Sobic004G051200 Sobic001G426600--Sobic004G051200 Sobic009G229600--Sobic009G049400 Sobic009G229600--Sobic001G369000 Sobic009G229600--Sobic001G335900 Sobic003G427600 Sobic003G427600 Sobic009G229600--Sobic003G427600 Sobic003G270600 Sobic003G270600 Sobic009G229600--Sobic003G270600 Sobic006G202200 Sobic006G202200 Sobic009G229600--Sobic006G202200 Sobic009G229600--Sobic001G518400 Sobic009G229600--Sobic004G039600 Sobic009G229600--Sobic007G120500
Octagon: transcription factors


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