Gene annotation
Transcriptome id Sobic.009G229600.2,Sobic.009G229600.1
Synonym Sb09g028250, GC5
Functional annotation tRNA-binding arm, putative, expressed
UniProt A0A1B6PA21 , A0A1B6PA46
Pfam PF12329 PF12325
Panther DB PTHR13140
NCBI CDD KOG4673; Transcription factor TMF, TATA element modulatory factor
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79830 : golgin candidate 5
RAP-DB (Rice) LOC_Os05g48620.1 : tRNA-binding arm, putative, expressed
MaizeGDB (Corn) Zm00025a054394 , Zm00025a044536 , Zm00025a036582
Brachypodium KQK04922
Barley HORVU1Hr1G086390.5 , HORVU1Hr1G086390.4 , HORVU1Hr1G086390.6 , HORVU1Hr1G086390.3 , HORVU1Hr1G086390.2
Wheat TraesCS1D02G399800 , TraesCS1D02G399800 , TraesCS1D02G399800 , TraesCS1D02G399800 , TraesCS1B02G419800 , TraesCS1B02G419800 , TraesCS1A02G391600 , TraesCS1A02G391600 , TraesCS1A02G391600 , TraesCS1A02G391600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G049400 "SRS3(Ortholog in rice:Kitagawa et al., 2010)"(PubMedID : 31659920)@ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
2 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
3 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
4 Sobic.003G427600 villin protein, putative, expressed -
5 Sobic.003G270600 adaptor complexes medium subunit family domain containing protein, expressed K12393: AP-1 complex subunit mu
6 Sobic.006G202200 ENTH domain containing protein, expressed K12471: epsin
7 Sobic.001G518400 EF hand family protein, putative, expressed -
8 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
9 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
10 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
11 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
12 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
13 Sobic.006G131000 expressed protein K11968: ariadne-1
14 Sobic.010G275500 EF hand family protein, putative, expressed -
15 Sobic.001G426600 SH3 domain containing protein, expressed -
16 Sobic.004G002400 expressed protein -
17 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
18 Sobic.003G240700 peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed -
19 Sobic.006G138000 expressed protein -
20 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10


Gene co-expression network
sample Sobic009G229600 Sobic009G229600 Sobic009G049400 Sobic009G049400 Sobic009G229600--Sobic009G049400 Sobic001G369000 Sobic001G369000 Sobic009G229600--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic009G229600--Sobic001G335900 Sobic003G427600 Sobic003G427600 Sobic009G229600--Sobic003G427600 Sobic003G270600 Sobic003G270600 Sobic009G229600--Sobic003G270600 Sobic006G202200 Sobic006G202200 Sobic009G229600--Sobic006G202200 Sobic001G518400 Sobic001G518400 Sobic009G229600--Sobic001G518400 Sobic004G039600 Sobic004G039600 Sobic009G229600--Sobic004G039600 Sobic007G120500 Sobic007G120500 Sobic009G229600--Sobic007G120500 Sobic009G049400--Sobic001G369000 Sobic009G049400--Sobic009G229600 Sobic001G426600 Sobic001G426600 Sobic009G049400--Sobic001G426600 Sobic003G394200 Sobic003G394200 Sobic009G049400--Sobic003G394200 Sobic009G049400--Sobic001G335900 Sobic006G163800 Sobic006G163800 Sobic009G049400--Sobic006G163800 Sobic003G189600 Sobic003G189600 Sobic009G049400--Sobic003G189600 Sobic009G049400--Sobic004G039600 Sobic003G240700 Sobic003G240700 Sobic009G049400--Sobic003G240700 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic001G369000--Sobic003G240700 Sobic001G369000--Sobic006G163800 Sobic006G138000 Sobic006G138000 Sobic001G369000--Sobic006G138000 Sobic001G369000--Sobic009G049400 Sobic001G369000--Sobic001G426600 Sobic001G369000--Sobic009G229600 Sobic001G335900--Sobic001G369000 Sobic001G335900--Sobic006G138000 Sobic001G335900--Sobic001G518400 Sobic001G170100 Sobic001G170100 Sobic001G335900--Sobic001G170100 Sobic001G335900--Sobic003G240700 Sobic001G335900--Sobic009G229600 Sobic001G335900--Sobic009G049400 Sobic001G335900--Sobic007G120500 SobicK004100 SobicK004100 Sobic001G335900--SobicK004100 Sobic003G427600--Sobic009G229600 Sobic006G131000 Sobic006G131000 Sobic003G427600--Sobic006G131000 Sobic003G427600--Sobic003G270600 Sobic004G236200 Sobic004G236200 Sobic003G427600--Sobic004G236200 Sobic003G427600--Sobic001G369000 Sobic001G281100 Sobic001G281100 Sobic003G427600--Sobic001G281100 Sobic006G077300 Sobic006G077300 Sobic003G427600--Sobic006G077300 Sobic004G344901 Sobic004G344901 Sobic003G427600--Sobic004G344901 Sobic003G427600--Sobic009G049400 Sobic003G270600--Sobic004G236200 Sobic003G270600--Sobic003G394200 Sobic003G270600--Sobic009G229600 Sobic003G270600--Sobic003G427600 Sobic009G226400 Sobic009G226400 Sobic003G270600--Sobic009G226400 Sobic003G270600--Sobic004G039600 Sobic003G270600--Sobic001G369000 Sobic003G270600--Sobic009G049400 Sobic004G228800 Sobic004G228800 Sobic003G270600--Sobic004G228800 Sobic003G008500 Sobic003G008500 Sobic006G202200--Sobic003G008500 Sobic004G345700 Sobic004G345700 Sobic006G202200--Sobic004G345700 Sobic006G082900 Sobic006G082900 Sobic006G202200--Sobic006G082900 Sobic006G202200--Sobic009G229600 Sobic006G202200--Sobic001G518400 Sobic009G126600 Sobic009G126600 Sobic006G202200--Sobic009G126600 Sobic003G401000 Sobic003G401000 Sobic006G202200--Sobic003G401000 Sobic009G214900 Sobic009G214900 Sobic006G202200--Sobic009G214900 Sobic008G149800 Sobic008G149800 Sobic006G202200--Sobic008G149800 Sobic001G518400--Sobic001G170100 Sobic001G518400--Sobic006G138000 Sobic001G518400--Sobic001G335900 Sobic001G078100 Sobic001G078100 Sobic001G518400--Sobic001G078100 Sobic001G518400--Sobic009G229600 Sobic010G275500 Sobic010G275500 Sobic001G518400--Sobic010G275500 Sobic001G518400--Sobic006G202200 Sobic003G126600 Sobic003G126600 Sobic001G518400--Sobic003G126600 Sobic001G518400--Sobic001G369000 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic004G039600--Sobic007G120500 Sobic007G120500--Sobic001G369000 Sobic007G120500--Sobic004G039600 Sobic007G120500--Sobic007G132100 Sobic007G120500--Sobic006G012500 Sobic003G057700 Sobic003G057700 Sobic007G120500--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic007G120500--Sobic003G249600 Sobic004G072100 Sobic004G072100 Sobic007G120500--Sobic004G072100 Sobic007G120500--Sobic010G053800 Sobic007G120500--Sobic003G394200
Octagon: transcription factors


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