Gene annotation
Transcriptome id Sobic.001G518400.1
Synonym Sb01g048350
Functional annotation EF hand family protein, putative, expressed
UniProt C5WZW8
Pfam PF13202 PF12763
Panther DB PTHR11216 PTHR11216:SF72
NCBI CDD KOG0998; Synaptic vesicle protein EHS-1 and related EH domain proteins
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT1G20760 : Calcium-binding EF hand family protein
RAP-DB (Rice) LOC_Os03g03830.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a053357 , Zm00025a042471 , Zm00025a000425 , Zm00025a018551
Brachypodium KQK23831 , KQK16641
Barley HORVU4Hr1G082280.10 , HORVU4Hr1G082280.6 , HORVU4Hr1G082280.7 , HORVU4Hr1G082280.4 , HORVU4Hr1G082280.5 , HORVU4Hr1G082280.2 , HORVU4Hr1G082280.3 , HORVU7Hr1G121230.2 , HORVU4Hr1G082280.1 , HORVU4Hr1G082280.8 , HORVU4Hr1G082280.9 , HORVU7Hr1G121230.4 , HORVU7Hr1G121230.1 , HORVU7Hr1G121230.3
Wheat TraesCS4D02G321600 , TraesCS5A02G497000 , TraesCS5A02G497000 , TraesCS7B02G476800 , TraesCS7B02G476800 , TraesCS7D02G539600 , TraesCS7D02G539600 , TraesCS7A02G553100 , TraesCS4B02G324500
Populus PNS22929 , PNT47139 , PNT47138 , PNT47137 , PNT47140 , PNT47141


JBrowse

Open New Page


cDNA sequences
Sobic.001G518400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
2 Sobic.006G138000 expressed protein -
3 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
4 Sobic.001G078100 expressed protein -
5 Sobic.009G229600 tRNA-binding arm, putative, expressed -
6 Sobic.010G275500 EF hand family protein, putative, expressed -
7 Sobic.006G202200 ENTH domain containing protein, expressed K12471: epsin
8 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
9 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
10 Sobic.001G267900 - -
11 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
12 Sobic.001G426600 SH3 domain containing protein, expressed -
13 Sobic.001G085700 STE_PAK_Ste20_KHSh_GCKh_HPKh.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
14 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
15 Sobic.006G165000 RNA recognition motif containing protein, expressed -
16 Sobic.003G240700 peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed -
17 Sobic.001G111600 expressed protein -
18 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
19 Sobic.009G049400 "SRS3(Ortholog in rice:Kitagawa et al., 2010)"(PubMedID : 31659920)@ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
20 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2


Gene co-expression network
sample Sobic001G518400 Sobic001G518400 Sobic001G170100 Sobic001G170100 Sobic001G518400--Sobic001G170100 Sobic006G138000 Sobic006G138000 Sobic001G518400--Sobic006G138000 Sobic001G335900 Sobic001G335900 Sobic001G518400--Sobic001G335900 Sobic001G078100 Sobic001G078100 Sobic001G518400--Sobic001G078100 Sobic009G229600 Sobic009G229600 Sobic001G518400--Sobic009G229600 Sobic010G275500 Sobic010G275500 Sobic001G518400--Sobic010G275500 Sobic006G202200 Sobic006G202200 Sobic001G518400--Sobic006G202200 Sobic003G126600 Sobic003G126600 Sobic001G518400--Sobic003G126600 Sobic001G369000 Sobic001G369000 Sobic001G518400--Sobic001G369000 Sobic001G170100--Sobic006G138000 Sobic001G170100--Sobic001G518400 Sobic001G426600 Sobic001G426600 Sobic001G170100--Sobic001G426600 Sobic001G170100--Sobic001G335900 Sobic001G170100--Sobic001G369000 Sobic001G170100--Sobic010G275500 Sobic003G240700 Sobic003G240700 Sobic001G170100--Sobic003G240700 Sobic010G147833 Sobic010G147833 Sobic001G170100--Sobic010G147833 Sobic007G019300 Sobic007G019300 Sobic001G170100--Sobic007G019300 Sobic006G138000--Sobic001G170100 Sobic006G138000--Sobic001G518400 Sobic006G138000--Sobic001G335900 Sobic006G138000--Sobic001G369000 Sobic006G138000--Sobic010G275500 Sobic006G138000--Sobic003G240700 Sobic003G187500 Sobic003G187500 Sobic006G138000--Sobic003G187500 Sobic006G138000--Sobic001G426600 Sobic010G053800 Sobic010G053800 Sobic006G138000--Sobic010G053800 Sobic001G335900--Sobic001G369000 Sobic001G335900--Sobic006G138000 Sobic001G335900--Sobic001G518400 Sobic001G335900--Sobic001G170100 Sobic001G335900--Sobic003G240700 Sobic001G335900--Sobic009G229600 Sobic009G049400 Sobic009G049400 Sobic001G335900--Sobic009G049400 Sobic007G120500 Sobic007G120500 Sobic001G335900--Sobic007G120500 SobicK004100 SobicK004100 Sobic001G335900--SobicK004100 Sobic001G078100--Sobic001G518400 Sobic001G111600 Sobic001G111600 Sobic001G078100--Sobic001G111600 Sobic007G027700 Sobic007G027700 Sobic001G078100--Sobic007G027700 Sobic005G220000 Sobic005G220000 Sobic001G078100--Sobic005G220000 Sobic003G314700 Sobic003G314700 Sobic001G078100--Sobic003G314700 Sobic001G094900 Sobic001G094900 Sobic001G078100--Sobic001G094900 Sobic004G325400 Sobic004G325400 Sobic001G078100--Sobic004G325400 Sobic001G026500 Sobic001G026500 Sobic001G078100--Sobic001G026500 Sobic001G078100--Sobic006G138000 Sobic009G229600--Sobic009G049400 Sobic009G229600--Sobic001G369000 Sobic009G229600--Sobic001G335900 Sobic003G427600 Sobic003G427600 Sobic009G229600--Sobic003G427600 Sobic003G270600 Sobic003G270600 Sobic009G229600--Sobic003G270600 Sobic009G229600--Sobic006G202200 Sobic009G229600--Sobic001G518400 Sobic004G039600 Sobic004G039600 Sobic009G229600--Sobic004G039600 Sobic009G229600--Sobic007G120500 Sobic010G275500--Sobic010G053800 Sobic004G072100 Sobic004G072100 Sobic010G275500--Sobic004G072100 Sobic006G012500 Sobic006G012500 Sobic010G275500--Sobic006G012500 Sobic001G155000 Sobic001G155000 Sobic010G275500--Sobic001G155000 Sobic010G116600 Sobic010G116600 Sobic010G275500--Sobic010G116600 Sobic010G069100 Sobic010G069100 Sobic010G275500--Sobic010G069100 Sobic009G119000 Sobic009G119000 Sobic010G275500--Sobic009G119000 Sobic007G183900 Sobic007G183900 Sobic010G275500--Sobic007G183900 Sobic002G397500 Sobic002G397500 Sobic010G275500--Sobic002G397500 Sobic003G008500 Sobic003G008500 Sobic006G202200--Sobic003G008500 Sobic004G345700 Sobic004G345700 Sobic006G202200--Sobic004G345700 Sobic006G082900 Sobic006G082900 Sobic006G202200--Sobic006G082900 Sobic006G202200--Sobic009G229600 Sobic006G202200--Sobic001G518400 Sobic009G126600 Sobic009G126600 Sobic006G202200--Sobic009G126600 Sobic003G401000 Sobic003G401000 Sobic006G202200--Sobic003G401000 Sobic009G214900 Sobic009G214900 Sobic006G202200--Sobic009G214900 Sobic008G149800 Sobic008G149800 Sobic006G202200--Sobic008G149800 Sobic003G126600--Sobic004G039600 Sobic003G249600 Sobic003G249600 Sobic003G126600--Sobic003G249600 Sobic003G126600--Sobic009G229600 Sobic003G126600--Sobic003G187500 Sobic003G126600--Sobic010G053800 Sobic003G126600--Sobic001G518400 Sobic003G126600--Sobic001G369000 Sobic003G187200 Sobic003G187200 Sobic003G126600--Sobic003G187200 Sobic003G126600--Sobic004G072100 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic001G369000--Sobic006G138000 Sobic001G369000--Sobic009G049400 Sobic001G369000--Sobic001G426600 Sobic001G369000--Sobic009G229600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.