Gene annotation
Transcriptome id Sobic.006G165000.1
Synonym Sb06g024100
Functional annotation RNA recognition motif containing protein, expressed
UniProt A0A1B6PMC7
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF493
NCBI CDD KOG0123; Polyadenylate-binding protein (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G44710 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g45930.3 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a056648 , Zm00025a010363
Brachypodium KQJ83870 , KQJ83871
Barley HORVU2Hr1G092920.1 , HORVU2Hr1G092920.2
Wheat TraesCS2A02G390200 , TraesCS2A02G390200 , TraesCS2A02G390200 , TraesCS2B02G409000 , TraesCS2B02G409000 , TraesCS2B02G409000 , TraesCS2D02G388400 , TraesCS2D02G388400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G165000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
2 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
3 Sobic.003G084900 expressed protein -
4 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
5 Sobic.010G028800 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
6 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
7 Sobic.009G126600 cyclin-dependent kinase D-1, putative, expressed K02202: cyclin-dependent kinase 7
8 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
9 Sobic.006G032400 expressed protein -
10 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
11 Sobic.001G267900 - -
12 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
13 Sobic.003G220200 protein kinase family protein, putative, expressed K17541: SCY1-like protein 2
14 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
15 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
16 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.001G094000 expressed protein -
18 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
19 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
20 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G165000 Sobic006G165000 Sobic003G241200 Sobic003G241200 Sobic006G165000--Sobic003G241200 Sobic001G155000 Sobic001G155000 Sobic006G165000--Sobic001G155000 Sobic003G084900 Sobic003G084900 Sobic006G165000--Sobic003G084900 Sobic003G200200 Sobic003G200200 Sobic006G165000--Sobic003G200200 Sobic010G028800 Sobic010G028800 Sobic006G165000--Sobic010G028800 Sobic004G145500 Sobic004G145500 Sobic006G165000--Sobic004G145500 Sobic009G126600 Sobic009G126600 Sobic006G165000--Sobic009G126600 Sobic001G222500 Sobic001G222500 Sobic006G165000--Sobic001G222500 Sobic006G032400 Sobic006G032400 Sobic006G165000--Sobic006G032400 Sobic004G084300 Sobic004G084300 Sobic003G241200--Sobic004G084300 Sobic003G241200--Sobic006G165000 Sobic003G241200--Sobic006G032400 Sobic002G248400 Sobic002G248400 Sobic003G241200--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic003G241200--Sobic002G320500 Sobic003G173950 Sobic003G173950 Sobic003G241200--Sobic003G173950 Sobic010G236400 Sobic010G236400 Sobic003G241200--Sobic010G236400 Sobic003G241200--Sobic003G200200 Sobic002G157000 Sobic002G157000 Sobic003G241200--Sobic002G157000 Sobic008G047800 Sobic008G047800 Sobic001G155000--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G155000--Sobic002G006900 Sobic001G155000--Sobic003G200200 Sobic009G040600 Sobic009G040600 Sobic001G155000--Sobic009G040600 Sobic001G155000--Sobic001G222500 Sobic007G011300 Sobic007G011300 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic007G217000 Sobic007G217000 Sobic001G155000--Sobic007G217000 Sobic010G056000 Sobic010G056000 Sobic003G084900--Sobic010G056000 Sobic007G096000 Sobic007G096000 Sobic003G084900--Sobic007G096000 Sobic003G084900--Sobic010G028800 Sobic008G173900 Sobic008G173900 Sobic003G084900--Sobic008G173900 Sobic008G054500 Sobic008G054500 Sobic003G084900--Sobic008G054500 Sobic003G084900--Sobic006G165000 Sobic002G144933 Sobic002G144933 Sobic003G084900--Sobic002G144933 Sobic001G111900 Sobic001G111900 Sobic003G084900--Sobic001G111900 Sobic003G268300 Sobic003G268300 Sobic003G084900--Sobic003G268300 Sobic003G200200--Sobic002G157000 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic007G096600 Sobic007G096600 Sobic003G200200--Sobic007G096600 Sobic003G200200--Sobic002G248400 Sobic003G200200--Sobic001G155000 Sobic003G200200--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic003G200200--Sobic003G170100 Sobic010G028800--Sobic003G084900 Sobic010G101800 Sobic010G101800 Sobic010G028800--Sobic010G101800 Sobic010G028800--Sobic010G056000 Sobic002G310200 Sobic002G310200 Sobic010G028800--Sobic002G310200 Sobic007G186900 Sobic007G186900 Sobic010G028800--Sobic007G186900 Sobic010G028800--Sobic006G165000 Sobic010G028800--Sobic001G155000 Sobic009G083500 Sobic009G083500 Sobic010G028800--Sobic009G083500 Sobic001G407200 Sobic001G407200 Sobic010G028800--Sobic001G407200 Sobic007G065400 Sobic007G065400 Sobic004G145500--Sobic007G065400 Sobic004G145500--Sobic008G173900 Sobic004G145500--Sobic002G144933 Sobic008G009700 Sobic008G009700 Sobic004G145500--Sobic008G009700 Sobic001G306900 Sobic001G306900 Sobic004G145500--Sobic001G306900 Sobic004G145500--Sobic003G200200 Sobic009G210500 Sobic009G210500 Sobic004G145500--Sobic009G210500 Sobic010G136600 Sobic010G136600 Sobic004G145500--Sobic010G136600 Sobic001G241200 Sobic001G241200 Sobic004G145500--Sobic001G241200 Sobic009G126600--Sobic001G222500 Sobic010G185400 Sobic010G185400 Sobic009G126600--Sobic010G185400 Sobic009G126600--Sobic006G165000 Sobic009G126600--Sobic001G155000 Sobic002G357700 Sobic002G357700 Sobic009G126600--Sobic002G357700 Sobic009G126600--Sobic001G407200 Sobic008G149800 Sobic008G149800 Sobic009G126600--Sobic008G149800 Sobic009G126600--Sobic003G241200 Sobic005G013200 Sobic005G013200 Sobic009G126600--Sobic005G013200 Sobic001G222500--Sobic004G084300 Sobic001G222500--Sobic008G047800 Sobic001G222500--Sobic001G155000 Sobic001G222500--Sobic002G310200 Sobic009G126400 Sobic009G126400 Sobic001G222500--Sobic009G126400 Sobic001G222500--Sobic009G040600 Sobic001G222500--Sobic002G006900 Sobic003G052200 Sobic003G052200 Sobic001G222500--Sobic003G052200 Sobic001G222500--Sobic007G096000 Sobic006G032400--Sobic002G320500 Sobic006G032400--Sobic002G248400 Sobic005G015900 Sobic005G015900 Sobic006G032400--Sobic005G015900 Sobic006G032400--Sobic003G241200 Sobic006G032400--Sobic009G210500 Sobic001G090400 Sobic001G090400 Sobic006G032400--Sobic001G090400 Sobic006G173100 Sobic006G173100 Sobic006G032400--Sobic006G173100 Sobic004G271000 Sobic004G271000 Sobic006G032400--Sobic004G271000 Sobic001G094000 Sobic001G094000 Sobic006G032400--Sobic001G094000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.