Gene annotation
Transcriptome id Sobic.006G173200.1,Sobic.006G173200.3,Sobic.006G173200.2,Sobic.006G173200.4
Synonym
Functional annotation beige/BEACH domain containing protein, expressed
UniProt A0A1Z5RED4 , A0A1Z5REH1 , Q6JAF9 , A0A1B6PMG7 , A0A1B6PMH0
Pfam PF14844 PF15787 PF02138 PF00400 PF14844 PF15787 PF02138
Panther DB PTHR13743 PTHR13743:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G45540 : WD-40 repeat family protein / beige-related
RAP-DB (Rice) LOC_Os04g46894.1 : beige/BEACH domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010274 , Zm00025a021420
Brachypodium PNT61626 , PNT61624 , PNT61623 , PNT61625
Barley HORVU6Hr1G063700.8 , HORVU6Hr1G063700.9 , HORVU6Hr1G063700.1 , HORVU6Hr1G063700.2 , HORVU6Hr1G063700.3 , HORVU6Hr1G063700.4 , HORVU6Hr1G063700.7 , HORVU2Hr1G097080.4 , HORVU2Hr1G097080.5 , HORVU2Hr1G097080.6 , HORVU2Hr1G097080.7 , HORVU2Hr1G097080.1 , HORVU2Hr1G097080.2 , HORVU2Hr1G097080.3 , HORVU2Hr1G097080.8 , HORVU2Hr1G097080.9 , HORVU2Hr1G097080.16 , HORVU2Hr1G097080.17 , HORVU2Hr1G097080.14 , HORVU2Hr1G097080.15 , HORVU2Hr1G097080.12 , HORVU2Hr1G097080.13 , HORVU2Hr1G097080.10 , HORVU2Hr1G097080.11 , HORVU2Hr1G097080.18 , HORVU2Hr1G097080.19 , HORVU2Hr1G097080.29 , HORVU2Hr1G097080.28 , HORVU2Hr1G097080.26 , HORVU2Hr1G097080.25 , HORVU2Hr1G097080.24 , HORVU2Hr1G097080.23 , HORVU2Hr1G097080.22 , HORVU2Hr1G097080.21 , HORVU2Hr1G097080.20 , HORVU2Hr1G097060.6 , HORVU2Hr1G097060.7 , HORVU2Hr1G097060.4 , HORVU2Hr1G097060.5 , HORVU2Hr1G097060.3 , HORVU2Hr1G097060.1 , HORVU6Hr1G063700.12 , HORVU6Hr1G063700.13 , HORVU6Hr1G063700.10 , HORVU6Hr1G063700.17 , HORVU6Hr1G063700.14 , HORVU6Hr1G063700.15 , HORVU6Hr1G063700.19 , HORVU6Hr1G063700.20
Wheat TraesCS2B02G429600 , TraesCS2B02G429600 , TraesCS6D02G229300 , TraesCS6D02G229300 , TraesCS6B02G277500 , TraesCS6B02G277500 , TraesCS2D02G408200 , TraesCS2D02G408200 , TraesCS2D02G408200 , TraesCS2A02G410800 , TraesCS2A02G410800 , TraesCS6A02G247100 , TraesCS6A02G247100
Populus PNT03472 , PNT03473 , PNT03475 , PNT49776 , PNT49775 , PNT49774 , PNT49772


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G507200 PIR, putative, expressed K05749: cytoplasmic FMR1 interacting protein
2 Sobic.009G073400 galactosyltransferase family protein, putative, expressed -
3 Sobic.003G435500 expressed protein -
4 Sobic.001G159800 KIP1, putative, expressed -
5 Sobic.010G090500 expressed protein -
6 Sobic.009G105900 amino acid permease family protein, putative, expressed K14427: SLC12A4_6, solute carrier family 12 (potassium/chloride transporter), member 4/6
7 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
8 Sobic.010G250800 DNA binding protein, putative, expressed -
9 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
10 Sobic.009G118900 expressed protein -
11 Sobic.003G131200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
12 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
13 Sobic.009G167100 TBC domain containing protein, expressed -
14 Sobic.009G061000 DNA binding protein, putative, expressed -
15 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
16 Sobic.006G254500 IQ calmodulin-binding motif family protein, putative, expressed -
17 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
18 Sobic.006G071628 - -
19 Sobic.009G126000 mannosylglycoprotein endo-beta-mannosidase, putative, expressed K18577: mannosylglycoprotein endo-beta-mannosidase
20 Sobic.010G099800 growth regulator related protein, putative, expressed -


Gene co-expression network
sample Sobic006G173200 Sobic006G173200 Sobic001G507200 Sobic001G507200 Sobic006G173200--Sobic001G507200 Sobic009G073400 Sobic009G073400 Sobic006G173200--Sobic009G073400 Sobic003G435500 Sobic003G435500 Sobic006G173200--Sobic003G435500 Sobic001G159800 Sobic001G159800 Sobic006G173200--Sobic001G159800 Sobic010G090500 Sobic010G090500 Sobic006G173200--Sobic010G090500 Sobic009G105900 Sobic009G105900 Sobic006G173200--Sobic009G105900 Sobic001G385400 Sobic001G385400 Sobic006G173200--Sobic001G385400 Sobic010G250800 Sobic010G250800 Sobic006G173200--Sobic010G250800 Sobic009G052100 Sobic009G052100 Sobic006G173200--Sobic009G052100 Sobic001G507200--Sobic009G052100 Sobic009G049200 Sobic009G049200 Sobic001G507200--Sobic009G049200 Sobic001G507200--Sobic006G173200 Sobic004G315700 Sobic004G315700 Sobic001G507200--Sobic004G315700 Sobic006G071628 Sobic006G071628 Sobic001G507200--Sobic006G071628 Sobic001G296800 Sobic001G296800 Sobic001G507200--Sobic001G296800 Sobic001G507200--Sobic001G385400 Sobic008G192700 Sobic008G192700 Sobic001G507200--Sobic008G192700 Sobic002G399900 Sobic002G399900 Sobic001G507200--Sobic002G399900 Sobic009G061000 Sobic009G061000 Sobic009G073400--Sobic009G061000 Sobic003G345200 Sobic003G345200 Sobic009G073400--Sobic003G345200 Sobic003G017500 Sobic003G017500 Sobic009G073400--Sobic003G017500 Sobic009G073400--Sobic006G173200 Sobic009G073400--Sobic001G159800 Sobic006G172200 Sobic006G172200 Sobic009G073400--Sobic006G172200 Sobic004G146300 Sobic004G146300 Sobic009G073400--Sobic004G146300 Sobic009G206500 Sobic009G206500 Sobic009G073400--Sobic009G206500 Sobic009G073400--Sobic010G090500 Sobic003G435500--Sobic001G385400 Sobic010G138900 Sobic010G138900 Sobic003G435500--Sobic010G138900 Sobic001G143600 Sobic001G143600 Sobic003G435500--Sobic001G143600 Sobic002G127400 Sobic002G127400 Sobic003G435500--Sobic002G127400 Sobic003G435500--Sobic006G173200 Sobic003G144300 Sobic003G144300 Sobic003G435500--Sobic003G144300 Sobic010G262100 Sobic010G262100 Sobic003G435500--Sobic010G262100 Sobic004G038100 Sobic004G038100 Sobic003G435500--Sobic004G038100 Sobic002G143200 Sobic002G143200 Sobic003G435500--Sobic002G143200 Sobic001G159800--Sobic010G090500 Sobic001G437500 Sobic001G437500 Sobic001G159800--Sobic001G437500 Sobic001G159800--Sobic009G061000 Sobic001G159800--Sobic009G206500 Sobic001G159800--Sobic009G073400 Sobic001G159800--Sobic003G017500 Sobic001G196000 Sobic001G196000 Sobic001G159800--Sobic001G196000 Sobic001G159800--Sobic006G173200 Sobic001G159800--Sobic001G507200 Sobic010G090500--Sobic001G159800 Sobic010G120300 Sobic010G120300 Sobic010G090500--Sobic010G120300 Sobic010G090500--Sobic009G206500 Sobic009G079100 Sobic009G079100 Sobic010G090500--Sobic009G079100 Sobic010G090500--Sobic001G437500 Sobic006G267500 Sobic006G267500 Sobic010G090500--Sobic006G267500 Sobic001G073150 Sobic001G073150 Sobic010G090500--Sobic001G073150 Sobic010G090500--Sobic009G061000 Sobic009G125900 Sobic009G125900 Sobic010G090500--Sobic009G125900 Sobic002G327000 Sobic002G327000 Sobic009G105900--Sobic002G327000 Sobic002G423500 Sobic002G423500 Sobic009G105900--Sobic002G423500 Sobic006G056200 Sobic006G056200 Sobic009G105900--Sobic006G056200 Sobic007G010900 Sobic007G010900 Sobic009G105900--Sobic007G010900 Sobic009G105900--Sobic006G173200 Sobic005G163700 Sobic005G163700 Sobic009G105900--Sobic005G163700 Sobic004G047200 Sobic004G047200 Sobic009G105900--Sobic004G047200 Sobic001G460500 Sobic001G460500 Sobic009G105900--Sobic001G460500 Sobic002G194800 Sobic002G194800 Sobic009G105900--Sobic002G194800 Sobic001G385400--Sobic001G143600 Sobic001G385400--Sobic002G143200 Sobic001G385400--Sobic003G435500 Sobic008G015200 Sobic008G015200 Sobic001G385400--Sobic008G015200 Sobic001G385400--Sobic010G250800 Sobic001G385400--Sobic001G507200 Sobic002G002100 Sobic002G002100 Sobic001G385400--Sobic002G002100 Sobic009G167100 Sobic009G167100 Sobic001G385400--Sobic009G167100 Sobic006G140600 Sobic006G140600 Sobic001G385400--Sobic006G140600 Sobic010G250800--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic010G250800--Sobic007G006800 Sobic010G250800--Sobic006G071628 Sobic001G408300 Sobic001G408300 Sobic010G250800--Sobic001G408300 Sobic010G250800--Sobic001G385400 Sobic010G250800--Sobic009G167100 Sobic005G088900 Sobic005G088900 Sobic010G250800--Sobic005G088900 Sobic010G250800--Sobic009G049200 Sobic010G250800--Sobic004G038100 Sobic009G052100--Sobic004G315700 Sobic004G156200 Sobic004G156200 Sobic009G052100--Sobic004G156200 Sobic009G052100--Sobic001G507200 Sobic009G052100--Sobic009G049200 Sobic009G052100--Sobic006G071628 Sobic009G052100--Sobic010G250800 Sobic003G315700 Sobic003G315700 Sobic009G052100--Sobic003G315700 Sobic010G252700 Sobic010G252700 Sobic009G052100--Sobic010G252700 Sobic003G420300 Sobic003G420300 Sobic009G052100--Sobic003G420300
Octagon: transcription factors


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