Gene annotation
Transcriptome id Sobic.006G033101.1
Synonym -
Functional annotation -
UniProt A0A1B6PJS7
Pfam PF10433 PF03178
Panther DB PTHR10644 PTHR10644:SF2
NCBI CDD -
KEGG Orthology K14401; CPSF1, cleavage and polyadenylation specificity factor subunit 1
Gene Ontology GO:0005634; nucleus GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G51660 : cleavage and polyadenylation specificity factor 160
RAP-DB (Rice) LOC_Os04g18010.1 : cleavage and polyadenylation specificity factor subunit 1, putative, expressed
MaizeGDB (Corn) Zm00025a011992
Brachypodium KQJ81989 , PNT60773 , PNT60774 , PNT60775 , KQJ81990
Barley HORVU2Hr1G011580.17 , HORVU2Hr1G011580.16 , HORVU2Hr1G011580.15 , HORVU2Hr1G011580.14 , HORVU2Hr1G011580.13 , HORVU2Hr1G011580.12 , HORVU2Hr1G011580.11 , HORVU2Hr1G011580.10 , HORVU2Hr1G011580.19 , HORVU2Hr1G011580.18 , HORVU2Hr1G011580.9 , HORVU2Hr1G011580.8 , HORVU2Hr1G011580.7 , HORVU2Hr1G011580.6 , HORVU2Hr1G011580.5 , HORVU2Hr1G011580.4 , HORVU2Hr1G011580.3 , HORVU2Hr1G011580.2 , HORVU2Hr1G011580.1 , HORVU2Hr1G011580.28 , HORVU2Hr1G011580.29 , HORVU2Hr1G011580.26 , HORVU2Hr1G011580.27 , HORVU2Hr1G011580.24 , HORVU2Hr1G011580.25 , HORVU2Hr1G011580.22 , HORVU2Hr1G011580.23 , HORVU2Hr1G011580.20 , HORVU2Hr1G011580.21
Wheat TraesCS2A02G061100 , TraesCS2A02G061100 , TraesCS2A02G061100 , TraesCS2A02G061100 , TraesCS2D02G060100 , TraesCS2D02G060100 , TraesCS2D02G060100 , TraesCS2D02G060100 , TraesCS2B02G074500
Populus PNT09067 , PNT09066 , PNT09069 , PNT09068 , PNT09070


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
2 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
3 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
4 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
5 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
6 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
7 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
8 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
9 Sobic.006G280100 SET domain containing protein, expressed -
10 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
11 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
12 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
13 Sobic.003G052800 RST1, putative, expressed -
14 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -
15 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
16 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
17 Sobic.002G043000 HEN1, putative, expressed -
18 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
19 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
20 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8


Gene co-expression network
sample Sobic006G033101 Sobic006G033101 Sobic004G038100 Sobic004G038100 Sobic006G033101--Sobic004G038100 Sobic009G104900 Sobic009G104900 Sobic006G033101--Sobic009G104900 Sobic001G373800 Sobic001G373800 Sobic006G033101--Sobic001G373800 Sobic006G181800 Sobic006G181800 Sobic006G033101--Sobic006G181800 Sobic002G371600 Sobic002G371600 Sobic006G033101--Sobic002G371600 Sobic001G373000 Sobic001G373000 Sobic006G033101--Sobic001G373000 Sobic002G126800 Sobic002G126800 Sobic006G033101--Sobic002G126800 Sobic002G430300 Sobic002G430300 Sobic006G033101--Sobic002G430300 Sobic006G280100 Sobic006G280100 Sobic006G033101--Sobic006G280100 Sobic004G038100--Sobic006G033101 Sobic004G038100--Sobic006G181800 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic010G188000 Sobic010G188000 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic004G038100--Sobic001G373800 Sobic004G038100--Sobic006G280100 Sobic004G038100--Sobic009G104900 Sobic009G104900--Sobic006G033101 Sobic009G104900--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic009G104900--Sobic002G132600 Sobic009G104900--Sobic002G126800 Sobic009G104900--Sobic004G038100 Sobic005G199200 Sobic005G199200 Sobic009G104900--Sobic005G199200 Sobic004G085000 Sobic004G085000 Sobic009G104900--Sobic004G085000 Sobic009G104900--Sobic001G373800 Sobic009G104900--Sobic002G430300 Sobic001G373800--Sobic002G371600 Sobic005G010900 Sobic005G010900 Sobic001G373800--Sobic005G010900 Sobic001G373800--Sobic006G033101 Sobic001G373800--Sobic004G038100 Sobic006G029100 Sobic006G029100 Sobic001G373800--Sobic006G029100 Sobic001G373800--Sobic006G181800 Sobic001G373800--Sobic001G373000 Sobic001G451300 Sobic001G451300 Sobic001G373800--Sobic001G451300 Sobic001G373800--Sobic009G104900 Sobic008G111600 Sobic008G111600 Sobic006G181800--Sobic008G111600 Sobic006G181800--Sobic004G038100 Sobic002G426100 Sobic002G426100 Sobic006G181800--Sobic002G426100 Sobic006G181800--Sobic006G033101 Sobic006G181800--Sobic002G371600 Sobic002G043000 Sobic002G043000 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G236000 Sobic006G236000 Sobic006G181800--Sobic006G236000 Sobic006G181800--Sobic010G188000 Sobic002G371600--Sobic001G373800 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic001G373000--Sobic010G188000 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic003G432300 Sobic003G432300 Sobic002G126800--Sobic003G432300 Sobic002G126800--Sobic005G028100 Sobic002G126800--Sobic001G373000 Sobic002G126800--Sobic009G104900 Sobic002G126800--Sobic002G132600 Sobic002G155100 Sobic002G155100 Sobic002G126800--Sobic002G155100 Sobic002G126800--Sobic006G033101 Sobic007G069700 Sobic007G069700 Sobic002G126800--Sobic007G069700 Sobic005G088900 Sobic005G088900 Sobic002G126800--Sobic005G088900 Sobic004G141800 Sobic004G141800 Sobic002G430300--Sobic004G141800 Sobic001G393700 Sobic001G393700 Sobic002G430300--Sobic001G393700 Sobic003G405500 Sobic003G405500 Sobic002G430300--Sobic003G405500 Sobic003G152400 Sobic003G152400 Sobic002G430300--Sobic003G152400 Sobic001G145400 Sobic001G145400 Sobic002G430300--Sobic001G145400 Sobic005G133800 Sobic005G133800 Sobic002G430300--Sobic005G133800 Sobic001G087600 Sobic001G087600 Sobic002G430300--Sobic001G087600 Sobic006G224800 Sobic006G224800 Sobic002G430300--Sobic006G224800 Sobic002G145800 Sobic002G145800 Sobic002G430300--Sobic002G145800 Sobic009G190200 Sobic009G190200 Sobic006G280100--Sobic009G190200 Sobic002G219900 Sobic002G219900 Sobic006G280100--Sobic002G219900 Sobic004G043750 Sobic004G043750 Sobic006G280100--Sobic004G043750 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic007G125700 Sobic007G125700 Sobic006G280100--Sobic007G125700 Sobic002G079100 Sobic002G079100 Sobic006G280100--Sobic002G079100 Sobic008G080500 Sobic008G080500 Sobic006G280100--Sobic008G080500
Octagon: transcription factors


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