Gene annotation
Transcriptome id Sobic.001G373800.1
Synonym ENS, ABH1, CBP80, ATCBP80, Sb01g035510
Functional annotation MIF4G domain containing protein, putative, expressed
UniProt A0A1Z5S9J1 , A0A097PNM5
Pfam PF02854 PF09090 PF09088
Panther DB PTHR12412
NCBI CDD -
KEGG Orthology K12882; NCBP1, nuclear cap-binding protein subunit 1
Gene Ontology GO:0005515; protein binding GO:0003723RNA binding GO:0016070RNA metabolic process GO:0005846nuclear cap binding complex GO:0000339RNA cap binding


Orthologs (automatic annotation)
TAIR AT2G13540 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os03g22570.2 : MIF4G domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002428
Brachypodium KQK21716
Barley HORVU4Hr1G049090.4 , HORVU4Hr1G049090.5 , HORVU4Hr1G049090.2 , HORVU4Hr1G049090.3 , HORVU4Hr1G049090.1
Wheat TraesCS4A02G138800 , TraesCS4A02G138800 , TraesCS6B02G066700 , TraesCS6B02G066700 , TraesCS4D02G167200 , TraesCS4B02G158000 , TraesCS4B02G158000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
2 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
3 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
4 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
5 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
6 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
7 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
8 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
9 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
10 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
11 Sobic.002G043000 HEN1, putative, expressed -
12 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
13 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
14 Sobic.003G052800 RST1, putative, expressed -
15 Sobic.004G141800 expressed protein -
16 Sobic.002G254800 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
17 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
18 Sobic.001G450000 nucleoporin, putative, expressed K14300: nuclear pore complex protein Nup133
19 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
20 Sobic.006G245900 FAR1 family protein, expressed -


Gene co-expression network
sample Sobic001G373800 Sobic001G373800 Sobic002G371600 Sobic002G371600 Sobic001G373800--Sobic002G371600 Sobic005G010900 Sobic005G010900 Sobic001G373800--Sobic005G010900 Sobic006G033101 Sobic006G033101 Sobic001G373800--Sobic006G033101 Sobic004G038100 Sobic004G038100 Sobic001G373800--Sobic004G038100 Sobic006G029100 Sobic006G029100 Sobic001G373800--Sobic006G029100 Sobic006G181800 Sobic006G181800 Sobic001G373800--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic001G373800--Sobic001G373000 Sobic001G451300 Sobic001G451300 Sobic001G373800--Sobic001G451300 Sobic009G104900 Sobic009G104900 Sobic001G373800--Sobic009G104900 Sobic002G371600--Sobic001G373800 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic004G085000 Sobic004G085000 Sobic005G010900--Sobic004G085000 Sobic005G010900--Sobic001G373800 Sobic010G114900 Sobic010G114900 Sobic005G010900--Sobic010G114900 Sobic004G315500 Sobic004G315500 Sobic005G010900--Sobic004G315500 Sobic003G199300 Sobic003G199300 Sobic005G010900--Sobic003G199300 Sobic005G010900--Sobic002G371600 Sobic008G049100 Sobic008G049100 Sobic005G010900--Sobic008G049100 Sobic006G125500 Sobic006G125500 Sobic005G010900--Sobic006G125500 Sobic003G123100 Sobic003G123100 Sobic005G010900--Sobic003G123100 Sobic006G033101--Sobic004G038100 Sobic006G033101--Sobic009G104900 Sobic006G033101--Sobic001G373800 Sobic006G033101--Sobic006G181800 Sobic006G033101--Sobic002G371600 Sobic006G033101--Sobic001G373000 Sobic002G126800 Sobic002G126800 Sobic006G033101--Sobic002G126800 Sobic002G430300 Sobic002G430300 Sobic006G033101--Sobic002G430300 Sobic006G280100 Sobic006G280100 Sobic006G033101--Sobic006G280100 Sobic004G038100--Sobic006G033101 Sobic004G038100--Sobic006G181800 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic010G188000 Sobic010G188000 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic004G038100--Sobic001G373800 Sobic004G038100--Sobic006G280100 Sobic004G038100--Sobic009G104900 Sobic006G029100--Sobic002G371600 Sobic006G029100--Sobic002G160700 Sobic002G386600 Sobic002G386600 Sobic006G029100--Sobic002G386600 Sobic004G141800 Sobic004G141800 Sobic006G029100--Sobic004G141800 Sobic003G256800 Sobic003G256800 Sobic006G029100--Sobic003G256800 Sobic006G029100--Sobic003G308500 Sobic006G029100--Sobic001G373800 Sobic001G200200 Sobic001G200200 Sobic006G029100--Sobic001G200200 Sobic010G070600 Sobic010G070600 Sobic006G029100--Sobic010G070600 Sobic008G111600 Sobic008G111600 Sobic006G181800--Sobic008G111600 Sobic006G181800--Sobic004G038100 Sobic002G426100 Sobic002G426100 Sobic006G181800--Sobic002G426100 Sobic006G181800--Sobic006G033101 Sobic006G181800--Sobic002G371600 Sobic002G043000 Sobic002G043000 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G236000 Sobic006G236000 Sobic006G181800--Sobic006G236000 Sobic006G181800--Sobic010G188000 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic001G373000--Sobic010G188000 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic001G451300--Sobic010G262100 Sobic004G034700 Sobic004G034700 Sobic001G451300--Sobic004G034700 Sobic010G138900 Sobic010G138900 Sobic001G451300--Sobic010G138900 Sobic002G043100 Sobic002G043100 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic001G451300--Sobic002G371600 Sobic009G142000 Sobic009G142000 Sobic001G451300--Sobic009G142000 Sobic002G399800 Sobic002G399800 Sobic001G451300--Sobic002G399800 Sobic009G104900--Sobic006G033101 Sobic009G104900--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic009G104900--Sobic002G132600 Sobic009G104900--Sobic002G126800 Sobic009G104900--Sobic004G038100 Sobic005G199200 Sobic005G199200 Sobic009G104900--Sobic005G199200 Sobic009G104900--Sobic004G085000 Sobic009G104900--Sobic001G373800 Sobic009G104900--Sobic002G430300
Octagon: transcription factors


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