Gene annotation
Transcriptome id Sobic.001G450000.1
Synonym Sb01g042300
Functional annotation nucleoporin, putative, expressed
UniProt C5WSL4
Pfam PF03177 PF08801
Panther DB PTHR13405 PTHR13405:SF11
NCBI CDD -
KEGG Orthology K14300; nuclear pore complex protein Nup133
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G05120 : Nucleoporin, Nup133/Nup155-like
RAP-DB (Rice) LOC_Os03g12450.1 : nucleoporin, putative, expressed
MaizeGDB (Corn) Zm00025a053003
Brachypodium KQK22784 , KQK22785 , KQK22783
Barley HORVU4Hr1G066290.9 , HORVU4Hr1G066290.8 , HORVU4Hr1G066290.3 , HORVU4Hr1G066290.2 , HORVU4Hr1G066290.1 , HORVU4Hr1G066290.7 , HORVU4Hr1G066290.6 , HORVU4Hr1G066290.5 , HORVU4Hr1G066290.4
Wheat TraesCS4A02G062200 , TraesCS4A02G062200 , TraesCS4A02G062200 , TraesCS4D02G239000 , TraesCS4D02G239000 , TraesCS4B02G238900 , TraesCS4B02G238900 , TraesCS4B02G238900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
2 Sobic.002G318800 - K14776: DDX10, ATP-dependent RNA helicase DDX10/DBP4
3 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
4 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
5 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
6 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
7 Sobic.010G080700 DNA-directed RNA polymerase subunit, putative, expressed K03021: RPC2, DNA-directed RNA polymerase III subunit RPC2
8 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
9 Sobic.006G047900 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
10 Sobic.002G399800 PWWP domain containing protein, expressed -
11 Sobic.008G091300 PolI-like DNA polymerase, putative, expressed K02349: DNA polymerase theta
12 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
13 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
14 Sobic.010G000800 PHD-finger domain containing protein, expressed -
15 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
16 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
17 Sobic.004G034700 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
18 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
19 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
20 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase


Gene co-expression network
sample Sobic001G450000 Sobic001G450000 Sobic003G375200 Sobic003G375200 Sobic001G450000--Sobic003G375200 Sobic002G318800 Sobic002G318800 Sobic001G450000--Sobic002G318800 Sobic007G097400 Sobic007G097400 Sobic001G450000--Sobic007G097400 Sobic001G020000 Sobic001G020000 Sobic001G450000--Sobic001G020000 Sobic002G412700 Sobic002G412700 Sobic001G450000--Sobic002G412700 Sobic006G029100 Sobic006G029100 Sobic001G450000--Sobic006G029100 Sobic010G080700 Sobic010G080700 Sobic001G450000--Sobic010G080700 Sobic001G451300 Sobic001G451300 Sobic001G450000--Sobic001G451300 Sobic006G047900 Sobic006G047900 Sobic001G450000--Sobic006G047900 Sobic003G375200--Sobic010G080700 Sobic010G059500 Sobic010G059500 Sobic003G375200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic003G375200--Sobic001G145400 Sobic001G255800 Sobic001G255800 Sobic003G375200--Sobic001G255800 Sobic002G133300 Sobic002G133300 Sobic003G375200--Sobic002G133300 Sobic002G179400 Sobic002G179400 Sobic003G375200--Sobic002G179400 Sobic003G039000 Sobic003G039000 Sobic003G375200--Sobic003G039000 Sobic003G375200--Sobic001G450000 Sobic008G091300 Sobic008G091300 Sobic003G375200--Sobic008G091300 Sobic001G239800 Sobic001G239800 Sobic002G318800--Sobic001G239800 Sobic002G318800--Sobic001G450000 Sobic002G318800--Sobic007G097400 Sobic007G075800 Sobic007G075800 Sobic002G318800--Sobic007G075800 Sobic003G209400 Sobic003G209400 Sobic002G318800--Sobic003G209400 Sobic006G125900 Sobic006G125900 Sobic002G318800--Sobic006G125900 Sobic008G051200 Sobic008G051200 Sobic002G318800--Sobic008G051200 Sobic007G201700 Sobic007G201700 Sobic002G318800--Sobic007G201700 Sobic002G112600 Sobic002G112600 Sobic002G318800--Sobic002G112600 Sobic009G213200 Sobic009G213200 Sobic007G097400--Sobic009G213200 Sobic001G276200 Sobic001G276200 Sobic007G097400--Sobic001G276200 Sobic010G100800 Sobic010G100800 Sobic007G097400--Sobic010G100800 Sobic004G171200 Sobic004G171200 Sobic007G097400--Sobic004G171200 Sobic007G097400--Sobic001G450000 Sobic007G097400--Sobic003G209400 Sobic006G128400 Sobic006G128400 Sobic007G097400--Sobic006G128400 Sobic007G097400--Sobic006G125900 Sobic006G137600 Sobic006G137600 Sobic007G097400--Sobic006G137600 Sobic001G219600 Sobic001G219600 Sobic001G020000--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic001G020000--Sobic001G433800 Sobic002G317200 Sobic002G317200 Sobic001G020000--Sobic002G317200 Sobic001G354600 Sobic001G354600 Sobic001G020000--Sobic001G354600 Sobic001G087600 Sobic001G087600 Sobic001G020000--Sobic001G087600 Sobic002G425500 Sobic002G425500 Sobic001G020000--Sobic002G425500 Sobic003G095900 Sobic003G095900 Sobic001G020000--Sobic003G095900 Sobic001G352900 Sobic001G352900 Sobic001G020000--Sobic001G352900 Sobic004G124300 Sobic004G124300 Sobic001G020000--Sobic004G124300 Sobic001G248100 Sobic001G248100 Sobic002G412700--Sobic001G248100 Sobic003G405500 Sobic003G405500 Sobic002G412700--Sobic003G405500 Sobic003G314700 Sobic003G314700 Sobic002G412700--Sobic003G314700 Sobic004G034700 Sobic004G034700 Sobic002G412700--Sobic004G034700 Sobic002G412700--Sobic003G209400 Sobic007G047600 Sobic007G047600 Sobic002G412700--Sobic007G047600 Sobic010G085200 Sobic010G085200 Sobic002G412700--Sobic010G085200 Sobic002G119600 Sobic002G119600 Sobic002G412700--Sobic002G119600 Sobic010G139500 Sobic010G139500 Sobic002G412700--Sobic010G139500 Sobic002G371600 Sobic002G371600 Sobic006G029100--Sobic002G371600 Sobic002G160700 Sobic002G160700 Sobic006G029100--Sobic002G160700 Sobic002G386600 Sobic002G386600 Sobic006G029100--Sobic002G386600 Sobic004G141800 Sobic004G141800 Sobic006G029100--Sobic004G141800 Sobic003G256800 Sobic003G256800 Sobic006G029100--Sobic003G256800 Sobic003G308500 Sobic003G308500 Sobic006G029100--Sobic003G308500 Sobic001G373800 Sobic001G373800 Sobic006G029100--Sobic001G373800 Sobic001G200200 Sobic001G200200 Sobic006G029100--Sobic001G200200 Sobic010G070600 Sobic010G070600 Sobic006G029100--Sobic010G070600 Sobic010G080700--Sobic003G375200 Sobic003G221400 Sobic003G221400 Sobic010G080700--Sobic003G221400 Sobic005G162500 Sobic005G162500 Sobic010G080700--Sobic005G162500 Sobic010G080700--Sobic002G179400 Sobic010G080700--Sobic010G059500 Sobic001G089600 Sobic001G089600 Sobic010G080700--Sobic001G089600 Sobic008G124800 Sobic008G124800 Sobic010G080700--Sobic008G124800 Sobic004G322400 Sobic004G322400 Sobic010G080700--Sobic004G322400 Sobic004G131300 Sobic004G131300 Sobic010G080700--Sobic004G131300 Sobic010G262100 Sobic010G262100 Sobic001G451300--Sobic010G262100 Sobic001G451300--Sobic004G034700 Sobic010G138900 Sobic010G138900 Sobic001G451300--Sobic010G138900 Sobic002G043100 Sobic002G043100 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic001G451300--Sobic002G371600 Sobic009G142000 Sobic009G142000 Sobic001G451300--Sobic009G142000 Sobic002G399800 Sobic002G399800 Sobic001G451300--Sobic002G399800 Sobic006G047900--Sobic003G375200 Sobic001G335300 Sobic001G335300 Sobic006G047900--Sobic001G335300 Sobic006G047900--Sobic001G450000 Sobic006G047900--Sobic004G034700 Sobic006G047900--Sobic010G080700 Sobic010G003400 Sobic010G003400 Sobic006G047900--Sobic010G003400 Sobic006G047900--Sobic001G451300 Sobic004G005100 Sobic004G005100 Sobic006G047900--Sobic004G005100 Sobic006G047900--Sobic002G179400
Octagon: transcription factors


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