Gene annotation
Transcriptome id Sobic.008G091300.3,Sobic.008G091300.1,Sobic.008G091300.2
Synonym TEB
Functional annotation PolI-like DNA polymerase, putative, expressed
UniProt A0A1Z5R667 , A0A1Z5R5L4 , A0A1Z5R5S4
Pfam PF00271 PF00270 PF00476
Panther DB PTHR10133 PTHR10133:SF35
NCBI CDD -
KEGG Orthology K02349; DNA polymerase theta
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0006260DNA replication GO:0003887DNA-directed DNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G32700 : helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding
RAP-DB (Rice) LOC_Os12g19370.1 : DNA polymerase I family protein, expressed
MaizeGDB (Corn) Zm00025a054278
Brachypodium KQJ86869
Barley HORVU0Hr1G026710.4 , HORVU0Hr1G026710.5 , HORVU0Hr1G026710.2 , HORVU0Hr1G026710.3 , HORVU0Hr1G026710.1 , HORVU1Hr1G065680.1 , HORVU1Hr1G065680.2 , HORVU1Hr1G065680.4 , HORVU1Hr1G065680.3
Wheat TraesCS1D02G324400 , TraesCS1A02G323500 , TraesCS1A02G323500 , TraesCS1B02G336400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G204100 expressed protein -
2 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
3 Sobic.002G179400 DNA binding protein, putative, expressed -
4 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
5 Sobic.003G233400 expressed protein -
6 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
7 Sobic.002G399800 PWWP domain containing protein, expressed -
8 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
9 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
10 Sobic.010G139500 phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
11 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
12 Sobic.008G124800 expressed protein -
13 Sobic.010G080700 DNA-directed RNA polymerase subunit, putative, expressed K03021: RPC2, DNA-directed RNA polymerase III subunit RPC2
14 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
15 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
16 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
17 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
18 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
19 Sobic.010G223100 PAP/25A associated domain containing protein, putative, expressed -
20 Sobic.001G453000 no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic008G091300 Sobic008G091300 Sobic004G204100 Sobic004G204100 Sobic008G091300--Sobic004G204100 Sobic003G375200 Sobic003G375200 Sobic008G091300--Sobic003G375200 Sobic002G179400 Sobic002G179400 Sobic008G091300--Sobic002G179400 Sobic004G053500 Sobic004G053500 Sobic008G091300--Sobic004G053500 Sobic003G233400 Sobic003G233400 Sobic008G091300--Sobic003G233400 Sobic004G085000 Sobic004G085000 Sobic008G091300--Sobic004G085000 Sobic002G399800 Sobic002G399800 Sobic008G091300--Sobic002G399800 Sobic004G256500 Sobic004G256500 Sobic008G091300--Sobic004G256500 Sobic001G451300 Sobic001G451300 Sobic008G091300--Sobic001G451300 Sobic010G223100 Sobic010G223100 Sobic004G204100--Sobic010G223100 Sobic010G139500 Sobic010G139500 Sobic004G204100--Sobic010G139500 Sobic001G287500 Sobic001G287500 Sobic004G204100--Sobic001G287500 Sobic004G204100--Sobic003G233400 Sobic004G023100 Sobic004G023100 Sobic004G204100--Sobic004G023100 Sobic003G314700 Sobic003G314700 Sobic004G204100--Sobic003G314700 Sobic004G204100--Sobic002G179400 Sobic004G040500 Sobic004G040500 Sobic004G204100--Sobic004G040500 Sobic003G163200 Sobic003G163200 Sobic004G204100--Sobic003G163200 Sobic010G080700 Sobic010G080700 Sobic003G375200--Sobic010G080700 Sobic010G059500 Sobic010G059500 Sobic003G375200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic003G375200--Sobic001G145400 Sobic001G255800 Sobic001G255800 Sobic003G375200--Sobic001G255800 Sobic002G133300 Sobic002G133300 Sobic003G375200--Sobic002G133300 Sobic003G375200--Sobic002G179400 Sobic003G039000 Sobic003G039000 Sobic003G375200--Sobic003G039000 Sobic001G450000 Sobic001G450000 Sobic003G375200--Sobic001G450000 Sobic003G375200--Sobic008G091300 Sobic001G493700 Sobic001G493700 Sobic002G179400--Sobic001G493700 Sobic002G042600 Sobic002G042600 Sobic002G179400--Sobic002G042600 Sobic002G179400--Sobic004G053500 Sobic002G429300 Sobic002G429300 Sobic002G179400--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic002G179400--Sobic006G184900 Sobic002G179400--Sobic003G233400 Sobic002G179400--Sobic002G133300 Sobic001G065100 Sobic001G065100 Sobic002G179400--Sobic001G065100 Sobic004G322400 Sobic004G322400 Sobic002G179400--Sobic004G322400 Sobic002G401500 Sobic002G401500 Sobic004G053500--Sobic002G401500 Sobic004G053500--Sobic002G179400 Sobic002G335600 Sobic002G335600 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic003G296900 Sobic003G296900 Sobic004G053500--Sobic003G296900 Sobic005G162500 Sobic005G162500 Sobic004G053500--Sobic005G162500 Sobic003G233400--Sobic001G287500 Sobic003G072200 Sobic003G072200 Sobic003G233400--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic003G233400--Sobic007G098500 Sobic001G137000 Sobic001G137000 Sobic003G233400--Sobic001G137000 Sobic003G312100 Sobic003G312100 Sobic003G233400--Sobic003G312100 Sobic008G092600 Sobic008G092600 Sobic003G233400--Sobic008G092600 Sobic002G396500 Sobic002G396500 Sobic003G233400--Sobic002G396500 Sobic003G233400--Sobic002G179400 Sobic004G051200 Sobic004G051200 Sobic003G233400--Sobic004G051200 Sobic004G085000--Sobic001G145400 Sobic010G114900 Sobic010G114900 Sobic004G085000--Sobic010G114900 Sobic006G185200 Sobic006G185200 Sobic004G085000--Sobic006G185200 Sobic003G199300 Sobic003G199300 Sobic004G085000--Sobic003G199300 Sobic005G010900 Sobic005G010900 Sobic004G085000--Sobic005G010900 Sobic001G219900 Sobic001G219900 Sobic004G085000--Sobic001G219900 Sobic002G430300 Sobic002G430300 Sobic004G085000--Sobic002G430300 Sobic009G101200 Sobic009G101200 Sobic004G085000--Sobic009G101200 Sobic006G086600 Sobic006G086600 Sobic004G085000--Sobic006G086600 Sobic003G095900 Sobic003G095900 Sobic002G399800--Sobic003G095900 Sobic003G260400 Sobic003G260400 Sobic002G399800--Sobic003G260400 Sobic010G079500 Sobic010G079500 Sobic002G399800--Sobic010G079500 Sobic004G248600 Sobic004G248600 Sobic002G399800--Sobic004G248600 Sobic002G399800--Sobic002G179400 Sobic002G399800--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic002G399800--Sobic001G089600 Sobic001G393900 Sobic001G393900 Sobic002G399800--Sobic001G393900 Sobic009G109200 Sobic009G109200 Sobic002G399800--Sobic009G109200 Sobic004G131300 Sobic004G131300 Sobic004G256500--Sobic004G131300 Sobic009G234700 Sobic009G234700 Sobic004G256500--Sobic009G234700 Sobic004G256500--Sobic001G145400 Sobic004G256500--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic004G256500--Sobic002G142900 Sobic004G256500--Sobic004G053500 Sobic002G371700 Sobic002G371700 Sobic004G256500--Sobic002G371700 Sobic004G256500--Sobic001G287500 Sobic001G087600 Sobic001G087600 Sobic004G256500--Sobic001G087600 Sobic010G262100 Sobic010G262100 Sobic001G451300--Sobic010G262100 Sobic004G034700 Sobic004G034700 Sobic001G451300--Sobic004G034700 Sobic010G138900 Sobic010G138900 Sobic001G451300--Sobic010G138900 Sobic002G043100 Sobic002G043100 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic002G371600 Sobic002G371600 Sobic001G451300--Sobic002G371600 Sobic009G142000 Sobic009G142000 Sobic001G451300--Sobic009G142000 Sobic001G451300--Sobic002G399800
Octagon: transcription factors


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