Gene annotation
Transcriptome id Sobic.002G234300.1
Synonym Sb02g027340
Functional annotation NOL1/NOP2/sun family protein, putative, expressed
UniProt C5X327
Pfam PF01189
Panther DB PTHR22808 PTHR22808:SF14
NCBI CDD KOG2198; tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily
KEGG Orthology K15334; NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT2G22400 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os09g29630.1 : NOL1/NOP2/sun family protein, putative, expressed
MaizeGDB (Corn) Zm00025a047348
Brachypodium KQJ90616 , KQJ98724 , KQJ98725 , PNT68315 , PNT68316 , PNT68317 , PNT68318
Barley HORVU4Hr1G010180.25 , HORVU4Hr1G010180.27 , HORVU4Hr1G010180.26 , HORVU4Hr1G010180.20 , HORVU4Hr1G010180.23 , HORVU4Hr1G010180.22 , HORVU4Hr1G010180.29 , HORVU4Hr1G010180.28 , HORVU4Hr1G010180.38 , HORVU4Hr1G010180.39 , HORVU4Hr1G010180.32 , HORVU4Hr1G010180.33 , HORVU4Hr1G010180.36 , HORVU4Hr1G010180.37 , HORVU4Hr1G010180.34 , HORVU4Hr1G010180.35 , HORVU4Hr1G010180.63 , HORVU4Hr1G010180.31 , HORVU4Hr1G010180.49 , HORVU4Hr1G010180.48 , HORVU4Hr1G010180.47 , HORVU4Hr1G010180.46 , HORVU4Hr1G010180.44 , HORVU4Hr1G010180.43 , HORVU4Hr1G010180.42 , HORVU4Hr1G010180.41 , HORVU4Hr1G010180.40 , HORVU4Hr1G010180.55 , HORVU5Hr1G070390.2 , HORVU5Hr1G070390.8 , HORVU5Hr1G070390.9 , HORVU4Hr1G010180.58 , HORVU4Hr1G010180.59 , HORVU4Hr1G010180.54 , HORVU5Hr1G070390.1 , HORVU4Hr1G010180.56 , HORVU5Hr1G070390.3 , HORVU4Hr1G010180.50 , HORVU4Hr1G010180.51 , HORVU4Hr1G010180.52 , HORVU5Hr1G070390.5 , HORVU5Hr1G070390.6 , HORVU5Hr1G070390.7 , HORVU5Hr1G070390.4 , HORVU4Hr1G010180.61 , HORVU4Hr1G010180.60 , HORVU4Hr1G010180.62 , HORVU4Hr1G010180.65 , HORVU4Hr1G010180.64 , HORVU4Hr1G010180.66 , HORVU4Hr1G010180.69 , HORVU4Hr1G010180.68 , HORVU4Hr1G010180.76 , HORVU4Hr1G010180.75 , HORVU4Hr1G010180.72 , HORVU4Hr1G010180.73 , HORVU4Hr1G010180.71 , HORVU4Hr1G010180.78 , HORVU4Hr1G010180.79 , HORVU4Hr1G010180.82 , HORVU4Hr1G010180.81 , HORVU4Hr1G010180.80 , HORVU4Hr1G010180.30 , HORVU4Hr1G010180.10 , HORVU4Hr1G010180.11 , HORVU4Hr1G010180.12 , HORVU4Hr1G010180.13 , HORVU4Hr1G010180.15 , HORVU4Hr1G010180.16 , HORVU4Hr1G010180.19 , HORVU4Hr1G010180.6 , HORVU4Hr1G010180.7 , HORVU4Hr1G010180.4
Wheat TraesCS5B02G247600 , TraesCS4A02G254100 , TraesCS4A02G254100 , TraesCS4A02G254100 , TraesCS5D02G256900 , TraesCS4D02G060100 , TraesCS4D02G060100 , TraesCS5A02G249700 , TraesCS5A02G249700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
2 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
3 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
4 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
5 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
6 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
7 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
8 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
9 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
10 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
11 Sobic.006G221600 expressed protein K14861: nucleolar pre-ribosomal-associated protein 1
12 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
13 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
14 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
15 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
16 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
17 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
18 Sobic.001G004400 - K14290: XPO1, exportin-1
19 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
20 Sobic.010G114900 expressed protein -


Gene co-expression network
sample Sobic002G234300 Sobic002G234300 Sobic002G071400 Sobic002G071400 Sobic002G234300--Sobic002G071400 Sobic004G256000 Sobic004G256000 Sobic002G234300--Sobic004G256000 Sobic008G049100 Sobic008G049100 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic009G217200 Sobic009G217200 Sobic002G234300--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic002G234300--Sobic001G453400 Sobic010G003400 Sobic010G003400 Sobic002G234300--Sobic010G003400 Sobic009G246500 Sobic009G246500 Sobic002G234300--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic002G234300--Sobic003G199300 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G071400--Sobic002G234300 Sobic010G205900 Sobic010G205900 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic006G221600 Sobic006G221600 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic003G123200 Sobic003G123200 Sobic002G071400--Sobic003G123200 Sobic004G085000 Sobic004G085000 Sobic002G071400--Sobic004G085000 Sobic004G256000--Sobic002G234300 Sobic002G112100 Sobic002G112100 Sobic004G256000--Sobic002G112100 Sobic004G256000--Sobic009G246500 Sobic004G256000--Sobic002G071400 Sobic009G249800 Sobic009G249800 Sobic004G256000--Sobic009G249800 Sobic006G269900 Sobic006G269900 Sobic004G256000--Sobic006G269900 Sobic008G169200 Sobic008G169200 Sobic004G256000--Sobic008G169200 Sobic004G256000--Sobic008G049100 Sobic008G160000 Sobic008G160000 Sobic004G256000--Sobic008G160000 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic008G049100--Sobic002G234300 Sobic008G163500 Sobic008G163500 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic007G054800 Sobic007G054800 Sobic001G110600--Sobic007G054800 Sobic001G004400 Sobic001G004400 Sobic001G110600--Sobic001G004400 Sobic003G221400 Sobic003G221400 Sobic001G110600--Sobic003G221400 Sobic001G493700 Sobic001G493700 Sobic001G110600--Sobic001G493700 Sobic001G191700 Sobic001G191700 Sobic001G110600--Sobic001G191700 Sobic005G162500 Sobic005G162500 Sobic001G110600--Sobic005G162500 Sobic003G233400 Sobic003G233400 Sobic001G110600--Sobic003G233400 Sobic008G085300 Sobic008G085300 Sobic001G110600--Sobic008G085300 Sobic001G287500 Sobic001G287500 Sobic001G110600--Sobic001G287500 Sobic003G156500 Sobic003G156500 Sobic009G217200--Sobic003G156500 Sobic009G217200--Sobic006G221600 Sobic009G217200--Sobic010G003400 Sobic009G217200--Sobic001G453400 Sobic009G217200--Sobic002G234300 Sobic009G217200--Sobic008G049100 Sobic009G217200--Sobic009G246500 Sobic009G217200--Sobic002G071400 Sobic010G114900 Sobic010G114900 Sobic009G217200--Sobic010G114900 Sobic001G453400--Sobic010G003400 Sobic006G086600 Sobic006G086600 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic001G453400--Sobic003G156500 Sobic001G052400 Sobic001G052400 Sobic001G453400--Sobic001G052400 Sobic001G089600 Sobic001G089600 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic001G453400--Sobic010G114900 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G246500--Sobic009G101200 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic003G199300--Sobic004G085000 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200
Octagon: transcription factors


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