Gene annotation
Transcriptome id Sobic.002G071400.1
Synonym Sb02g006000
Functional annotation S1 RNA binding domain containing protein, expressed
UniProt A0A1B6Q9M7
Pfam PF05843 PF00575
Panther DB PTHR23270 PTHR23270:SF10
NCBI CDD -
KEGG Orthology K14792; RRP5, rRNA biogenesis protein RRP5
Gene Ontology GO:0006397; mRNA processing GO:0005634nucleus GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G11964 : RNA binding;RNA binding
RAP-DB (Rice) LOC_Os07g10350.1 : S1 RNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045330 , Zm00025a045331 , Zm00025a045332 , Zm00025a045333 , Zm00025a045328
Brachypodium KQK18044
Barley HORVU1Hr1G014010.43 , HORVU1Hr1G014010.40 , HORVU1Hr1G014010.41 , HORVU1Hr1G014010.46 , HORVU1Hr1G014010.47 , HORVU1Hr1G014010.44 , HORVU1Hr1G014010.45 , HORVU1Hr1G014010.48 , HORVU1Hr1G014010.49 , HORVU1Hr1G014010.36 , HORVU1Hr1G014010.35 , HORVU1Hr1G014010.34 , HORVU1Hr1G014010.33 , HORVU1Hr1G014010.32 , HORVU1Hr1G014010.31 , HORVU1Hr1G014010.30 , HORVU1Hr1G014010.39 , HORVU1Hr1G014010.24 , HORVU1Hr1G014010.25 , HORVU1Hr1G014010.26 , HORVU1Hr1G014010.27 , HORVU1Hr1G014010.20 , HORVU1Hr1G014010.21 , HORVU1Hr1G014010.22 , HORVU1Hr1G014010.23 , HORVU1Hr1G014010.28 , HORVU1Hr1G014010.29 , HORVU1Hr1G014010.13 , HORVU1Hr1G014010.19 , HORVU1Hr1G014010.18 , HORVU1Hr1G014010.11 , HORVU1Hr1G014010.10 , HORVU1Hr1G014010.12 , HORVU1Hr1G014010.15 , HORVU1Hr1G014010.14 , HORVU1Hr1G014010.17 , HORVU1Hr1G014010.16 , HORVU1Hr1G014010.9 , HORVU1Hr1G014010.8 , HORVU1Hr1G014010.5 , HORVU1Hr1G014010.4 , HORVU1Hr1G014010.7 , HORVU1Hr1G014010.6 , HORVU1Hr1G014010.1 , HORVU1Hr1G014010.3 , HORVU1Hr1G014010.2 , HORVU1Hr1G014010.50 , HORVU1Hr1G014010.55 , HORVU1Hr1G014010.51 , HORVU1Hr1G014010.52
Wheat TraesCS1D02G068300 , TraesCS1D02G068300 , TraesCS1A02G067300 , TraesCS1A02G067300 , TraesCS1A02G067300 , TraesCS1B02G085800 , TraesCS1B02G085800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
2 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
3 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
4 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
5 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
6 Sobic.006G221600 expressed protein K14861: nucleolar pre-ribosomal-associated protein 1
7 Sobic.009G173600 expressed protein K14572: MDN1, midasin
8 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
9 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
10 Sobic.007G056200 HEAT repeat family protein, putative, expressed -
11 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
12 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
13 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
14 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
15 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
16 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
17 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
18 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
19 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
20 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase


Gene co-expression network
sample Sobic002G071400 Sobic002G071400 Sobic008G049100 Sobic008G049100 Sobic002G071400--Sobic008G049100 Sobic003G199300 Sobic003G199300 Sobic002G071400--Sobic003G199300 Sobic002G234300 Sobic002G234300 Sobic002G071400--Sobic002G234300 Sobic010G205900 Sobic010G205900 Sobic002G071400--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic002G071400--Sobic009G246500 Sobic006G221600 Sobic006G221600 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic003G123200 Sobic003G123200 Sobic002G071400--Sobic003G123200 Sobic004G085000 Sobic004G085000 Sobic002G071400--Sobic004G085000 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic008G049100--Sobic002G234300 Sobic008G163500 Sobic008G163500 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic003G199300--Sobic004G085000 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200 Sobic002G234300--Sobic002G071400 Sobic004G256000 Sobic004G256000 Sobic002G234300--Sobic004G256000 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic009G217200 Sobic009G217200 Sobic002G234300--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic002G234300--Sobic001G453400 Sobic010G003400 Sobic010G003400 Sobic002G234300--Sobic010G003400 Sobic002G234300--Sobic009G246500 Sobic002G234300--Sobic003G199300 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic005G028100 Sobic005G028100 Sobic010G205900--Sobic005G028100 Sobic010G205900--Sobic002G071400 Sobic010G205900--Sobic005G098800 Sobic010G205900--Sobic008G163500 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200 Sobic006G221600--Sobic009G217200 Sobic006G221600--Sobic002G071400 Sobic010G114900 Sobic010G114900 Sobic006G221600--Sobic010G114900 Sobic006G221600--Sobic008G049100 Sobic006G221600--Sobic003G199300 Sobic006G221600--Sobic002G234300 Sobic010G017900 Sobic010G017900 Sobic006G221600--Sobic010G017900 Sobic006G221600--Sobic010G205900 Sobic007G056200 Sobic007G056200 Sobic006G221600--Sobic007G056200 Sobic009G173600--Sobic002G071400 Sobic009G173600--Sobic008G049100 Sobic001G173800 Sobic001G173800 Sobic009G173600--Sobic001G173800 Sobic001G382500 Sobic001G382500 Sobic009G173600--Sobic001G382500 Sobic009G173600--Sobic010G205900 Sobic001G544300 Sobic001G544300 Sobic009G173600--Sobic001G544300 Sobic009G173600--Sobic003G123200 Sobic009G173600--Sobic003G199300 Sobic009G173600--Sobic009G246500 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic001G145400 Sobic001G145400 Sobic004G085000--Sobic001G145400 Sobic004G085000--Sobic010G114900 Sobic004G085000--Sobic006G185200 Sobic004G085000--Sobic003G199300 Sobic005G010900 Sobic005G010900 Sobic004G085000--Sobic005G010900 Sobic001G219900 Sobic001G219900 Sobic004G085000--Sobic001G219900 Sobic002G430300 Sobic002G430300 Sobic004G085000--Sobic002G430300 Sobic004G085000--Sobic009G101200 Sobic006G086600 Sobic006G086600 Sobic004G085000--Sobic006G086600
Octagon: transcription factors


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