Gene annotation
Transcriptome id Sobic.009G173600.1
Synonym
Functional annotation expressed protein
UniProt C5YZQ9
Pfam PF07728
Panther DB PTHR22908 PTHR22908:SF66
NCBI CDD -
KEGG Orthology K14572; MDN1, midasin
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G67120 : ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding
RAP-DB (Rice) LOC_Os10g31864.1 : expressed protein
MaizeGDB (Corn) Zm00025a043987
Brachypodium KQJ96949 , PNT67485 , PNT67484 , PNT67483 , PNT67482
Barley HORVU1Hr1G038180.53 , HORVU1Hr1G038180.52 , HORVU1Hr1G038180.24 , HORVU1Hr1G038180.25 , HORVU1Hr1G038180.26 , HORVU1Hr1G038180.27 , HORVU1Hr1G038180.20 , HORVU1Hr1G038180.21 , HORVU1Hr1G038180.22 , HORVU1Hr1G038180.23 , HORVU1Hr1G038180.28 , HORVU1Hr1G038180.29 , HORVU1Hr1G038180.11 , HORVU1Hr1G038180.10 , HORVU1Hr1G038180.15 , HORVU1Hr1G038180.14 , HORVU1Hr1G038180.17 , HORVU1Hr1G038180.16 , HORVU1Hr1G038180.9 , HORVU1Hr1G038180.8 , HORVU1Hr1G038180.5 , HORVU1Hr1G038180.7 , HORVU1Hr1G038180.6 , HORVU1Hr1G038180.1 , HORVU1Hr1G038180.3 , HORVU1Hr1G038180.2 , HORVU1Hr1G038180.19 , HORVU1Hr1G038180.70 , HORVU1Hr1G038180.13 , HORVU1Hr1G038180.12 , HORVU1Hr1G038180.68 , HORVU1Hr1G038180.69 , HORVU1Hr1G038180.60 , HORVU1Hr1G038180.61 , HORVU1Hr1G038180.62 , HORVU1Hr1G038180.63 , HORVU1Hr1G038180.65 , HORVU1Hr1G038180.66 , HORVU1Hr1G038180.67 , HORVU1Hr1G038180.59 , HORVU1Hr1G038180.58 , HORVU1Hr1G038180.55 , HORVU1Hr1G038180.54 , HORVU1Hr1G038180.57 , HORVU1Hr1G038180.56 , HORVU1Hr1G038180.51 , HORVU1Hr1G038180.50 , HORVU1Hr1G038180.18 , HORVU1Hr1G038180.42 , HORVU1Hr1G038180.43 , HORVU1Hr1G038180.40 , HORVU1Hr1G038180.41 , HORVU1Hr1G038180.46 , HORVU1Hr1G038180.47 , HORVU1Hr1G038180.44 , HORVU1Hr1G038180.45 , HORVU1Hr1G038180.48 , HORVU1Hr1G038180.49 , HORVU1Hr1G038180.37 , HORVU1Hr1G038180.36 , HORVU1Hr1G038180.35 , HORVU1Hr1G038180.34 , HORVU1Hr1G038180.33 , HORVU1Hr1G038180.32 , HORVU1Hr1G038180.31 , HORVU1Hr1G038180.30 , HORVU1Hr1G038180.39 , HORVU1Hr1G038180.38 , HORVU1Hr1G038180.4
Wheat TraesCS1A02G143400 , TraesCS1B02G160800 , TraesCS1D02G142200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
2 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
3 Sobic.001G173800 nop14-like family protein, expressed K14766: NOP14, nucleolar protein 14
4 Sobic.001G382500 AARP2CN domain containing protein, expressed K14569: ribosome biogenesis protein BMS1
5 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
6 Sobic.001G544300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed -
7 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
8 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
9 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
10 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
11 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
12 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
13 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
14 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
15 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
16 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
17 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
18 Sobic.006G143200 - K14805: DDX24, ATP-dependent RNA helicase DDX24/MAK5
19 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
20 Sobic.006G221600 expressed protein K14861: nucleolar pre-ribosomal-associated protein 1


Gene co-expression network
sample Sobic009G173600 Sobic009G173600 Sobic002G071400 Sobic002G071400 Sobic009G173600--Sobic002G071400 Sobic008G049100 Sobic008G049100 Sobic009G173600--Sobic008G049100 Sobic001G173800 Sobic001G173800 Sobic009G173600--Sobic001G173800 Sobic001G382500 Sobic001G382500 Sobic009G173600--Sobic001G382500 Sobic010G205900 Sobic010G205900 Sobic009G173600--Sobic010G205900 Sobic001G544300 Sobic001G544300 Sobic009G173600--Sobic001G544300 Sobic003G123200 Sobic003G123200 Sobic009G173600--Sobic003G123200 Sobic003G199300 Sobic003G199300 Sobic009G173600--Sobic003G199300 Sobic009G246500 Sobic009G246500 Sobic009G173600--Sobic009G246500 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G234300 Sobic002G234300 Sobic002G071400--Sobic002G234300 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic006G221600 Sobic006G221600 Sobic002G071400--Sobic006G221600 Sobic002G071400--Sobic009G173600 Sobic002G071400--Sobic003G123200 Sobic004G085000 Sobic004G085000 Sobic002G071400--Sobic004G085000 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic008G049100--Sobic002G234300 Sobic008G163500 Sobic008G163500 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic001G173800--Sobic001G382500 Sobic001G501400 Sobic001G501400 Sobic001G173800--Sobic001G501400 Sobic001G173800--Sobic008G163500 Sobic001G173800--Sobic008G049100 Sobic001G173800--Sobic009G173600 Sobic009G235200 Sobic009G235200 Sobic001G173800--Sobic009G235200 Sobic003G156500 Sobic003G156500 Sobic001G173800--Sobic003G156500 Sobic001G173800--Sobic009G246500 Sobic005G000300 Sobic005G000300 Sobic001G173800--Sobic005G000300 Sobic001G382500--Sobic001G173800 Sobic001G382500--Sobic009G235200 Sobic001G382500--Sobic009G173600 Sobic006G245800 Sobic006G245800 Sobic001G382500--Sobic006G245800 Sobic001G382500--Sobic001G501400 Sobic001G382500--Sobic003G156500 Sobic009G217200 Sobic009G217200 Sobic001G382500--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic001G382500--Sobic001G453400 Sobic010G114900 Sobic010G114900 Sobic001G382500--Sobic010G114900 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic005G028100 Sobic005G028100 Sobic010G205900--Sobic005G028100 Sobic010G205900--Sobic002G071400 Sobic010G205900--Sobic005G098800 Sobic010G205900--Sobic008G163500 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic001G049800 Sobic001G049800 Sobic001G544300--Sobic001G049800 Sobic002G378100 Sobic002G378100 Sobic001G544300--Sobic002G378100 Sobic004G151000 Sobic004G151000 Sobic001G544300--Sobic004G151000 Sobic001G544300--Sobic003G123200 Sobic010G224700 Sobic010G224700 Sobic001G544300--Sobic010G224700 Sobic007G060600 Sobic007G060600 Sobic001G544300--Sobic007G060600 Sobic001G544300--Sobic008G049100 Sobic001G544300--Sobic003G199300 Sobic010G083900 Sobic010G083900 Sobic001G544300--Sobic010G083900 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic006G198600 Sobic006G198600 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic003G199300--Sobic004G085000 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic003G199300--Sobic002G378100 Sobic003G199300--Sobic009G246500 Sobic003G199300--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic003G199300--Sobic006G185200 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic009G246500--Sobic008G163500 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200
Octagon: transcription factors


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