Gene annotation
Transcriptome id Sobic.005G010900.2
Synonym
Functional annotation expressed protein
UniProt A0A1Z5RG10
Pfam -
Panther DB PTHR31431 PTHR31431:SF1
NCBI CDD KOG4833; Uncharacterized conserved protein
KEGG Orthology K14311; nuclear pore complex protein Nup188
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38760 : Protein of unknown function (DUF3414)
RAP-DB (Rice) LOC_Os10g06610.1 : expressed protein
MaizeGDB (Corn) Zm00025a003806
Brachypodium KQJ96096 , KQJ96097 , KQJ96095
Barley HORVU7Hr1G031100.4 , HORVU7Hr1G031100.5 , HORVU7Hr1G031100.1 , HORVU7Hr1G031100.2 , HORVU7Hr1G031100.3
Wheat TraesCS7B02G055100 , TraesCS7D02G153000 , TraesCS7A02G151100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
2 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
3 Sobic.010G114900 expressed protein -
4 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
5 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
6 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
7 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
8 Sobic.006G125500 expressed protein -
9 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
10 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
11 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
12 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
13 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
14 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
15 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
16 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
17 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
18 Sobic.007G155500 pentatricopeptide containing protein, putative, expressed -
19 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
20 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T


Gene co-expression network
sample Sobic005G010900 Sobic005G010900 Sobic004G085000 Sobic004G085000 Sobic005G010900--Sobic004G085000 Sobic001G373800 Sobic001G373800 Sobic005G010900--Sobic001G373800 Sobic010G114900 Sobic010G114900 Sobic005G010900--Sobic010G114900 Sobic004G315500 Sobic004G315500 Sobic005G010900--Sobic004G315500 Sobic003G199300 Sobic003G199300 Sobic005G010900--Sobic003G199300 Sobic002G371600 Sobic002G371600 Sobic005G010900--Sobic002G371600 Sobic008G049100 Sobic008G049100 Sobic005G010900--Sobic008G049100 Sobic006G125500 Sobic006G125500 Sobic005G010900--Sobic006G125500 Sobic003G123100 Sobic003G123100 Sobic005G010900--Sobic003G123100 Sobic001G145400 Sobic001G145400 Sobic004G085000--Sobic001G145400 Sobic004G085000--Sobic010G114900 Sobic006G185200 Sobic006G185200 Sobic004G085000--Sobic006G185200 Sobic004G085000--Sobic003G199300 Sobic004G085000--Sobic005G010900 Sobic001G219900 Sobic001G219900 Sobic004G085000--Sobic001G219900 Sobic002G430300 Sobic002G430300 Sobic004G085000--Sobic002G430300 Sobic009G101200 Sobic009G101200 Sobic004G085000--Sobic009G101200 Sobic006G086600 Sobic006G086600 Sobic004G085000--Sobic006G086600 Sobic001G373800--Sobic002G371600 Sobic001G373800--Sobic005G010900 Sobic006G033101 Sobic006G033101 Sobic001G373800--Sobic006G033101 Sobic004G038100 Sobic004G038100 Sobic001G373800--Sobic004G038100 Sobic006G029100 Sobic006G029100 Sobic001G373800--Sobic006G029100 Sobic006G181800 Sobic006G181800 Sobic001G373800--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic001G373800--Sobic001G373000 Sobic001G451300 Sobic001G451300 Sobic001G373800--Sobic001G451300 Sobic009G104900 Sobic009G104900 Sobic001G373800--Sobic009G104900 Sobic007G077900 Sobic007G077900 Sobic010G114900--Sobic007G077900 Sobic010G114900--Sobic004G085000 Sobic001G453400 Sobic001G453400 Sobic010G114900--Sobic001G453400 Sobic003G312100 Sobic003G312100 Sobic010G114900--Sobic003G312100 Sobic007G168300 Sobic007G168300 Sobic010G114900--Sobic007G168300 Sobic010G003400 Sobic010G003400 Sobic010G114900--Sobic010G003400 Sobic007G155500 Sobic007G155500 Sobic010G114900--Sobic007G155500 Sobic010G114900--Sobic005G010900 Sobic001G052400 Sobic001G052400 Sobic010G114900--Sobic001G052400 Sobic001G488100 Sobic001G488100 Sobic004G315500--Sobic001G488100 Sobic004G315500--Sobic005G010900 Sobic004G315500--Sobic001G373000 Sobic010G188000 Sobic010G188000 Sobic004G315500--Sobic010G188000 Sobic004G322300 Sobic004G322300 Sobic004G315500--Sobic004G322300 Sobic006G137700 Sobic006G137700 Sobic004G315500--Sobic006G137700 Sobic001G239800 Sobic001G239800 Sobic004G315500--Sobic001G239800 Sobic007G089800 Sobic007G089800 Sobic004G315500--Sobic007G089800 Sobic004G315500--Sobic003G123100 Sobic002G071400 Sobic002G071400 Sobic003G199300--Sobic002G071400 Sobic003G199300--Sobic008G049100 Sobic003G199300--Sobic004G085000 Sobic010G205900 Sobic010G205900 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic002G378100 Sobic002G378100 Sobic003G199300--Sobic002G378100 Sobic009G246500 Sobic009G246500 Sobic003G199300--Sobic009G246500 Sobic010G224700 Sobic010G224700 Sobic003G199300--Sobic010G224700 Sobic003G199300--Sobic006G185200 Sobic002G371600--Sobic001G373800 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic008G049100--Sobic010G205900 Sobic008G049100--Sobic002G071400 Sobic008G049100--Sobic009G246500 Sobic008G049100--Sobic003G199300 Sobic003G123200 Sobic003G123200 Sobic008G049100--Sobic003G123200 Sobic005G098800 Sobic005G098800 Sobic008G049100--Sobic005G098800 Sobic002G234300 Sobic002G234300 Sobic008G049100--Sobic002G234300 Sobic008G163500 Sobic008G163500 Sobic008G049100--Sobic008G163500 Sobic006G193300 Sobic006G193300 Sobic008G049100--Sobic006G193300 Sobic006G125500--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic006G125500--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic006G125500--Sobic006G002800 Sobic003G146600 Sobic003G146600 Sobic006G125500--Sobic003G146600 Sobic006G125500--Sobic002G371600 Sobic010G080700 Sobic010G080700 Sobic006G125500--Sobic010G080700 Sobic004G332400 Sobic004G332400 Sobic006G125500--Sobic004G332400 Sobic006G125500--Sobic007G155500 Sobic006G125500--Sobic005G010900 Sobic007G014800 Sobic007G014800 Sobic003G123100--Sobic007G014800 Sobic006G236000 Sobic006G236000 Sobic003G123100--Sobic006G236000 Sobic009G142000 Sobic009G142000 Sobic003G123100--Sobic009G142000 Sobic003G123100--Sobic010G262100 Sobic003G123100--Sobic001G239800 Sobic003G123100--Sobic001G451300 Sobic002G252100 Sobic002G252100 Sobic003G123100--Sobic002G252100 Sobic003G123100--Sobic005G010900 Sobic006G112700 Sobic006G112700 Sobic003G123100--Sobic006G112700
Octagon: transcription factors


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