Gene annotation
Transcriptome id Sobic.004G315500.1
Synonym RFC5, Sb04g034710, RFC3
Functional annotation RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed
UniProt C5XTJ5
Pfam PF08542 PF00004
Panther DB PTHR11669 PTHR11669:SF9
NCBI CDD KOG0990; Replication factor C, subunit RFC5
KEGG Orthology K10756; replication factor C subunit 3/5
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G77470 : replication factor C subunit 3
RAP-DB (Rice) LOC_Os02g53500.2 : RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed
MaizeGDB (Corn) Zm00025a022295
Brachypodium KQK01663 , KQK01664 , PNT69543
Barley HORVU6Hr1G078830.6 , HORVU6Hr1G078830.7 , HORVU6Hr1G078830.4 , HORVU6Hr1G078830.5 , HORVU6Hr1G078830.2 , HORVU6Hr1G078830.3 , HORVU6Hr1G078830.1
Wheat TraesCS6A02G322400 , TraesCS6A02G322400 , TraesCS6D02G302200 , TraesCS2D02G435100 , TraesCS2D02G435100 , TraesCS6B02G353100 , TraesCS6B02G353100 , TraesCS2B02G458200 , TraesCS2B02G458200
Populus PNT48473 , PNT48472 , PNT48471


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
2 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
3 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
4 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
5 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
6 Sobic.006G137700 Spc97 / Spc98 family protein, putative, expressed K16569: TUBGCP2, gamma-tubulin complex component 2
7 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
8 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
9 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
10 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
11 Sobic.009G134900 PPR repeat domain containing protein, putative, expressed -
12 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
13 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
14 Sobic.006G178100 coiled-coil domain-containing protein 139, putative, expressed K07583: tRNA pseudouridine synthase 10
15 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
16 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
17 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
18 Sobic.004G224600 expressed protein -
19 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
20 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G315500 Sobic004G315500 Sobic001G488100 Sobic001G488100 Sobic004G315500--Sobic001G488100 Sobic005G010900 Sobic005G010900 Sobic004G315500--Sobic005G010900 Sobic001G373000 Sobic001G373000 Sobic004G315500--Sobic001G373000 Sobic010G188000 Sobic010G188000 Sobic004G315500--Sobic010G188000 Sobic004G322300 Sobic004G322300 Sobic004G315500--Sobic004G322300 Sobic006G137700 Sobic006G137700 Sobic004G315500--Sobic006G137700 Sobic001G239800 Sobic001G239800 Sobic004G315500--Sobic001G239800 Sobic007G089800 Sobic007G089800 Sobic004G315500--Sobic007G089800 Sobic003G123100 Sobic003G123100 Sobic004G315500--Sobic003G123100 Sobic001G488100--Sobic004G315500 Sobic001G488100--Sobic006G137700 Sobic002G405500 Sobic002G405500 Sobic001G488100--Sobic002G405500 Sobic009G234700 Sobic009G234700 Sobic001G488100--Sobic009G234700 Sobic001G488100--Sobic010G188000 Sobic006G002800 Sobic006G002800 Sobic001G488100--Sobic006G002800 Sobic001G488100--Sobic001G373000 Sobic009G134900 Sobic009G134900 Sobic001G488100--Sobic009G134900 Sobic008G160000 Sobic008G160000 Sobic001G488100--Sobic008G160000 Sobic004G085000 Sobic004G085000 Sobic005G010900--Sobic004G085000 Sobic001G373800 Sobic001G373800 Sobic005G010900--Sobic001G373800 Sobic010G114900 Sobic010G114900 Sobic005G010900--Sobic010G114900 Sobic005G010900--Sobic004G315500 Sobic003G199300 Sobic003G199300 Sobic005G010900--Sobic003G199300 Sobic002G371600 Sobic002G371600 Sobic005G010900--Sobic002G371600 Sobic008G049100 Sobic008G049100 Sobic005G010900--Sobic008G049100 Sobic006G125500 Sobic006G125500 Sobic005G010900--Sobic006G125500 Sobic005G010900--Sobic003G123100 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic010G188000--Sobic001G373000 Sobic010G188000--Sobic004G038100 Sobic010G188000--Sobic002G371600 Sobic006G181800 Sobic006G181800 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic010G188000--Sobic004G315500 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic004G322300--Sobic002G371600 Sobic003G388000 Sobic003G388000 Sobic004G322300--Sobic003G388000 Sobic004G322300--Sobic004G315500 Sobic004G322300--Sobic009G134900 Sobic010G081700 Sobic010G081700 Sobic004G322300--Sobic010G081700 Sobic006G178100 Sobic006G178100 Sobic004G322300--Sobic006G178100 Sobic008G111600 Sobic008G111600 Sobic004G322300--Sobic008G111600 Sobic004G322300--Sobic002G160700 Sobic003G306400 Sobic003G306400 Sobic004G322300--Sobic003G306400 Sobic006G137700--Sobic001G488100 Sobic006G137700--Sobic004G315500 Sobic006G137700--Sobic005G010900 Sobic002G327000 Sobic002G327000 Sobic006G137700--Sobic002G327000 Sobic006G137700--Sobic010G114900 Sobic004G149700 Sobic004G149700 Sobic006G137700--Sobic004G149700 Sobic006G137700--Sobic009G134900 Sobic006G137700--Sobic001G373000 Sobic007G051700 Sobic007G051700 Sobic006G137700--Sobic007G051700 Sobic006G112700 Sobic006G112700 Sobic001G239800--Sobic006G112700 Sobic001G239800--Sobic003G123100 Sobic002G318800 Sobic002G318800 Sobic001G239800--Sobic002G318800 Sobic003G330900 Sobic003G330900 Sobic001G239800--Sobic003G330900 Sobic001G536000 Sobic001G536000 Sobic001G239800--Sobic001G536000 Sobic002G252100 Sobic002G252100 Sobic001G239800--Sobic002G252100 Sobic007G014800 Sobic007G014800 Sobic001G239800--Sobic007G014800 Sobic006G125900 Sobic006G125900 Sobic001G239800--Sobic006G125900 Sobic001G239800--Sobic004G315500 Sobic007G089800--Sobic001G373000 Sobic007G089800--Sobic006G002800 Sobic001G408600 Sobic001G408600 Sobic007G089800--Sobic001G408600 Sobic007G089800--Sobic004G315500 Sobic007G089800--Sobic010G188000 Sobic001G461300 Sobic001G461300 Sobic007G089800--Sobic001G461300 Sobic006G193300 Sobic006G193300 Sobic007G089800--Sobic006G193300 Sobic010G205900 Sobic010G205900 Sobic007G089800--Sobic010G205900 Sobic010G186600 Sobic010G186600 Sobic007G089800--Sobic010G186600 Sobic003G123100--Sobic007G014800 Sobic006G236000 Sobic006G236000 Sobic003G123100--Sobic006G236000 Sobic009G142000 Sobic009G142000 Sobic003G123100--Sobic009G142000 Sobic010G262100 Sobic010G262100 Sobic003G123100--Sobic010G262100 Sobic003G123100--Sobic001G239800 Sobic003G123100--Sobic001G451300 Sobic003G123100--Sobic002G252100 Sobic003G123100--Sobic005G010900 Sobic003G123100--Sobic006G112700
Octagon: transcription factors


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