Gene annotation
Transcriptome id Sobic.010G188000.1
Synonym MEE5, GFA1, Sb10g023820, CLO
Functional annotation elongation factor, putative, expressed
UniProt C5Z5Q8
Pfam PF03144 PF00679 PF03764 PF16004 PF00009
Panther DB PTHR23115 PTHR23115:SF5
NCBI CDD -
KEGG Orthology K12852; 116 kDa U5 small nuclear ribonucleoprotein component
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G06220 : Ribosomal protein S5/Elongation factor G/III/V family protein
RAP-DB (Rice) LOC_Os06g40600.1 : elongation factor, putative, expressed
MaizeGDB (Corn) Zm00025a051346
Brachypodium KQK17727
Barley HORVU7Hr1G090710.8 , HORVU7Hr1G090710.9 , HORVU7Hr1G090710.5 , HORVU7Hr1G090710.6 , HORVU7Hr1G090710.7 , HORVU7Hr1G090710.3 , HORVU7Hr1G090710.11 , HORVU7Hr1G090710.4 , HORVU7Hr1G090710.1
Wheat TraesCS7D02G376800 , TraesCS7D02G376800 , TraesCS7B02G282300 , TraesCS7A02G380300
Populus -


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cDNA sequences
Sobic.010G188000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
2 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
3 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
4 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
5 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
6 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
7 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
8 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
9 Sobic.010G236600 oligopeptidase, putative, expressed K01410: mitochondrial intermediate peptidase
10 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
11 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
12 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
13 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
14 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
15 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -
16 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
17 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
18 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
19 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
20 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase


Gene co-expression network
sample Sobic010G188000 Sobic010G188000 Sobic001G373000 Sobic001G373000 Sobic010G188000--Sobic001G373000 Sobic004G038100 Sobic004G038100 Sobic010G188000--Sobic004G038100 Sobic002G371600 Sobic002G371600 Sobic010G188000--Sobic002G371600 Sobic006G181800 Sobic006G181800 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic004G315500 Sobic004G315500 Sobic010G188000--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic006G033101 Sobic006G033101 Sobic004G038100--Sobic006G033101 Sobic004G038100--Sobic006G181800 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic004G038100--Sobic010G188000 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic004G038100--Sobic009G104900 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic008G111600 Sobic008G111600 Sobic006G181800--Sobic008G111600 Sobic006G181800--Sobic004G038100 Sobic002G426100 Sobic002G426100 Sobic006G181800--Sobic002G426100 Sobic006G181800--Sobic006G033101 Sobic006G181800--Sobic002G371600 Sobic002G043000 Sobic002G043000 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G236000 Sobic006G236000 Sobic006G181800--Sobic006G236000 Sobic006G181800--Sobic010G188000 Sobic001G451300--Sobic010G262100 Sobic004G034700 Sobic004G034700 Sobic001G451300--Sobic004G034700 Sobic010G138900 Sobic010G138900 Sobic001G451300--Sobic010G138900 Sobic002G043100 Sobic002G043100 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic001G451300--Sobic002G371600 Sobic009G142000 Sobic009G142000 Sobic001G451300--Sobic009G142000 Sobic002G399800 Sobic002G399800 Sobic001G451300--Sobic002G399800 Sobic001G151600 Sobic001G151600 Sobic002G160700--Sobic001G151600 Sobic002G160700--Sobic002G371600 Sobic002G160700--Sobic006G029100 Sobic001G248100 Sobic001G248100 Sobic002G160700--Sobic001G248100 Sobic006G265600 Sobic006G265600 Sobic002G160700--Sobic006G265600 Sobic002G199400 Sobic002G199400 Sobic002G160700--Sobic002G199400 Sobic002G408900 Sobic002G408900 Sobic002G160700--Sobic002G408900 Sobic004G030400 Sobic004G030400 Sobic002G160700--Sobic004G030400 Sobic005G115500 Sobic005G115500 Sobic002G160700--Sobic005G115500 Sobic001G488100 Sobic001G488100 Sobic004G315500--Sobic001G488100 Sobic004G315500--Sobic005G010900 Sobic004G315500--Sobic001G373000 Sobic004G315500--Sobic010G188000 Sobic004G322300 Sobic004G322300 Sobic004G315500--Sobic004G322300 Sobic006G137700 Sobic006G137700 Sobic004G315500--Sobic006G137700 Sobic001G239800 Sobic001G239800 Sobic004G315500--Sobic001G239800 Sobic007G089800 Sobic007G089800 Sobic004G315500--Sobic007G089800 Sobic003G123100 Sobic003G123100 Sobic004G315500--Sobic003G123100 Sobic004G085000 Sobic004G085000 Sobic005G010900--Sobic004G085000 Sobic005G010900--Sobic001G373800 Sobic010G114900 Sobic010G114900 Sobic005G010900--Sobic010G114900 Sobic005G010900--Sobic004G315500 Sobic003G199300 Sobic003G199300 Sobic005G010900--Sobic003G199300 Sobic005G010900--Sobic002G371600 Sobic008G049100 Sobic008G049100 Sobic005G010900--Sobic008G049100 Sobic006G125500 Sobic006G125500 Sobic005G010900--Sobic006G125500 Sobic005G010900--Sobic003G123100 Sobic006G208400 Sobic006G208400 Sobic010G236600--Sobic006G208400 Sobic010G236600--Sobic010G188000 Sobic009G045900 Sobic009G045900 Sobic010G236600--Sobic009G045900 Sobic001G460500 Sobic001G460500 Sobic010G236600--Sobic001G460500 Sobic003G008600 Sobic003G008600 Sobic010G236600--Sobic003G008600 Sobic002G145300 Sobic002G145300 Sobic010G236600--Sobic002G145300 Sobic010G250800 Sobic010G250800 Sobic010G236600--Sobic010G250800 Sobic001G368100 Sobic001G368100 Sobic010G236600--Sobic001G368100 Sobic002G056400 Sobic002G056400 Sobic010G236600--Sobic002G056400
Octagon: transcription factors


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