Gene annotation
Transcriptome id Sobic.006G181800.19,Sobic.006G181800.2,Sobic.006G181800.16,Sobic.006G181800.5,Sobic.006G181800.11,Sobic.006G181800.14,Sobic.006G181800.9,Sobic.006G181800.15,Sobic.006G181800.1,Sobic.006G181800.12,Sobic.006G181800.18,Sobic.006G181800.10,Sobic.006G181800.4,Sobic.006G181800.13,Sobic.006G181800.17,Sobic.006G181800.6,Sobic.006G181800.3,Sobic.006G181800.8,Sobic.006G181800.7
Synonym
Functional annotation gamma-tubulin complex component 6, putative, expressed
UniProt A0A1B6PMM4 , A0A1Z5REI7 , A0A1Z5RF20
Pfam PF04130
Panther DB PTHR19302 PTHR19302:SF37 PTHR19302:SF37 PTHR19302
NCBI CDD KOG2000; Gamma-tubulin complex, DGRIP91/SPC98 component
KEGG Orthology K16573; TUBGCP6, gamma-tubulin complex component 6
Gene Ontology GO:0000226; microtubule cytoskeleton organization GO:0000922spindle pole GO:0005815microtubule organizing center GO:0005815microtubule organizing center GO:0000922spindle pole GO:0000226microtubule cytoskeleton organization


Orthologs (automatic annotation)
TAIR AT3G43610 : Spc97 / Spc98 family of spindle pole body (SBP) component
RAP-DB (Rice) LOC_Os04g47912.1,LOC_Os04g47912.2,LOC_Os04g47906.2 : expressed protein,gamma-tubulin complex component 6, putative, expressed
MaizeGDB (Corn) Zm00025a010184 , Zm00025a056784
Brachypodium KQJ84087
Barley HORVU2Hr1G095490.12 , HORVU2Hr1G095490.14 , HORVU2Hr1G095490.9 , HORVU2Hr1G095490.11 , HORVU2Hr1G095490.10 , HORVU2Hr1G095490.13 , HORVU2Hr1G095490.5 , HORVU2Hr1G095490.4 , HORVU2Hr1G095490.7 , HORVU2Hr1G095490.1 , HORVU2Hr1G095490.3 , HORVU2Hr1G095490.2 , HORVU2Hr1G095490.8
Wheat TraesCS2D02G399800 , TraesCS2A02G402500 , TraesCS2A02G402500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
2 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
3 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
4 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
5 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
6 Sobic.002G043000 HEN1, putative, expressed -
7 Sobic.008G092800 expressed protein -
8 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
9 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
10 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
11 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
12 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
13 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
14 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
15 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
16 Sobic.003G144000 pentatricopeptide, putative, expressed -
17 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
18 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
19 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
20 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188


Gene co-expression network
sample Sobic006G181800 Sobic006G181800 Sobic008G111600 Sobic008G111600 Sobic006G181800--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic006G181800--Sobic004G038100 Sobic002G426100 Sobic002G426100 Sobic006G181800--Sobic002G426100 Sobic006G033101 Sobic006G033101 Sobic006G181800--Sobic006G033101 Sobic002G371600 Sobic002G371600 Sobic006G181800--Sobic002G371600 Sobic002G043000 Sobic002G043000 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G236000 Sobic006G236000 Sobic006G181800--Sobic006G236000 Sobic010G188000 Sobic010G188000 Sobic006G181800--Sobic010G188000 Sobic008G111600--Sobic002G426100 Sobic008G111600--Sobic006G181800 Sobic002G362200 Sobic002G362200 Sobic008G111600--Sobic002G362200 Sobic004G215900 Sobic004G215900 Sobic008G111600--Sobic004G215900 Sobic008G111600--Sobic002G043000 Sobic001G024000 Sobic001G024000 Sobic008G111600--Sobic001G024000 Sobic002G078100 Sobic002G078100 Sobic008G111600--Sobic002G078100 Sobic002G003300 Sobic002G003300 Sobic008G111600--Sobic002G003300 Sobic003G144000 Sobic003G144000 Sobic008G111600--Sobic003G144000 Sobic004G038100--Sobic006G033101 Sobic004G038100--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic004G038100--Sobic001G373000 Sobic004G038100--Sobic004G215900 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic009G104900 Sobic009G104900 Sobic004G038100--Sobic009G104900 Sobic009G120400 Sobic009G120400 Sobic002G426100--Sobic009G120400 Sobic002G426100--Sobic008G111600 Sobic002G426100--Sobic006G181800 Sobic002G426100--Sobic002G078100 Sobic002G426100--Sobic002G043000 Sobic006G017800 Sobic006G017800 Sobic002G426100--Sobic006G017800 Sobic002G066800 Sobic002G066800 Sobic002G426100--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G426100--Sobic007G186400 Sobic004G129500 Sobic004G129500 Sobic002G426100--Sobic004G129500 Sobic006G033101--Sobic004G038100 Sobic006G033101--Sobic009G104900 Sobic006G033101--Sobic001G373800 Sobic006G033101--Sobic006G181800 Sobic006G033101--Sobic002G371600 Sobic006G033101--Sobic001G373000 Sobic002G126800 Sobic002G126800 Sobic006G033101--Sobic002G126800 Sobic002G430300 Sobic002G430300 Sobic006G033101--Sobic002G430300 Sobic006G033101--Sobic006G280100 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic002G043000--Sobic008G111600 Sobic002G043000--Sobic004G215900 Sobic002G043000--Sobic002G426100 Sobic002G043000--Sobic006G236000 Sobic008G068100 Sobic008G068100 Sobic002G043000--Sobic008G068100 Sobic002G043000--Sobic006G181800 Sobic002G043000--Sobic004G038100 Sobic002G043000--Sobic006G280100 Sobic002G043000--Sobic004G129500 Sobic003G143800 Sobic003G143800 Sobic008G092800--Sobic003G143800 Sobic007G145400 Sobic007G145400 Sobic008G092800--Sobic007G145400 Sobic003G016500 Sobic003G016500 Sobic008G092800--Sobic003G016500 Sobic001G248100 Sobic001G248100 Sobic008G092800--Sobic001G248100 Sobic008G092800--Sobic010G262100 Sobic001G437400 Sobic001G437400 Sobic008G092800--Sobic001G437400 Sobic007G047600 Sobic007G047600 Sobic008G092800--Sobic007G047600 Sobic008G092800--Sobic006G181800 Sobic008G092800--Sobic002G371600 Sobic006G236000--Sobic004G215900 Sobic006G236000--Sobic008G068100 Sobic003G123100 Sobic003G123100 Sobic006G236000--Sobic003G123100 Sobic006G236000--Sobic002G043000 Sobic006G112700 Sobic006G112700 Sobic006G236000--Sobic006G112700 Sobic006G236000--Sobic006G181800 Sobic009G191500 Sobic009G191500 Sobic006G236000--Sobic009G191500 Sobic006G236000--Sobic002G003300 Sobic006G236000--Sobic008G111600 Sobic010G188000--Sobic001G373000 Sobic010G188000--Sobic004G038100 Sobic010G188000--Sobic002G371600 Sobic010G188000--Sobic006G181800 Sobic010G188000--Sobic001G451300 Sobic010G188000--Sobic002G160700 Sobic004G315500 Sobic004G315500 Sobic010G188000--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600
Octagon: transcription factors


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