Gene annotation
Transcriptome id Sobic.004G038100.2,Sobic.004G038100.1
Synonym ATNUP160, SAR1, NUP160
Functional annotation expressed protein
UniProt A0A194YNN3 , A0A1Z5RKT5
Pfam PF11715
Panther DB PTHR21286
NCBI CDD KOG4521; Nuclear pore complex, Nup160 component
KEGG Orthology K14303; NUP160, nuclear pore complex protein Nup160
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G33410 : SUPPRESSOR OF AUXIN RESISTANCE1
RAP-DB (Rice) LOC_Os02g04970.1 : expressed protein
MaizeGDB (Corn) Zm00025a018961
Brachypodium KQJ93285
Barley HORVU6Hr1G020420.16 , HORVU6Hr1G020420.17 , HORVU6Hr1G020420.14 , HORVU6Hr1G020420.15 , HORVU6Hr1G020420.12 , HORVU6Hr1G020420.13 , HORVU6Hr1G020420.10 , HORVU6Hr1G020420.18 , HORVU6Hr1G020420.4 , HORVU6Hr1G020420.5 , HORVU6Hr1G020420.6 , HORVU6Hr1G020420.1 , HORVU6Hr1G020420.2 , HORVU6Hr1G020420.3 , HORVU6Hr1G020420.8 , HORVU6Hr1G020420.9
Wheat TraesCS6D02G102600 , TraesCS6A02G112600 , TraesCS6B02G141600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
2 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
3 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
4 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
5 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
6 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
7 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
8 Sobic.006G280100 SET domain containing protein, expressed -
9 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
10 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
11 Sobic.002G043000 HEN1, putative, expressed -
12 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
13 Sobic.004G342300 expressed protein -
14 Sobic.010G250800 DNA binding protein, putative, expressed -
15 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
16 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
17 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
18 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
19 Sobic.010G262100 expressed protein -
20 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2


Gene co-expression network
sample Sobic004G038100 Sobic004G038100 Sobic006G033101 Sobic006G033101 Sobic004G038100--Sobic006G033101 Sobic006G181800 Sobic006G181800 Sobic004G038100--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic010G188000 Sobic010G188000 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic009G104900 Sobic009G104900 Sobic004G038100--Sobic009G104900 Sobic006G033101--Sobic004G038100 Sobic006G033101--Sobic009G104900 Sobic006G033101--Sobic001G373800 Sobic006G033101--Sobic006G181800 Sobic002G371600 Sobic002G371600 Sobic006G033101--Sobic002G371600 Sobic006G033101--Sobic001G373000 Sobic002G126800 Sobic002G126800 Sobic006G033101--Sobic002G126800 Sobic002G430300 Sobic002G430300 Sobic006G033101--Sobic002G430300 Sobic006G033101--Sobic006G280100 Sobic008G111600 Sobic008G111600 Sobic006G181800--Sobic008G111600 Sobic006G181800--Sobic004G038100 Sobic002G426100 Sobic002G426100 Sobic006G181800--Sobic002G426100 Sobic006G181800--Sobic006G033101 Sobic006G181800--Sobic002G371600 Sobic002G043000 Sobic002G043000 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G236000 Sobic006G236000 Sobic006G181800--Sobic006G236000 Sobic006G181800--Sobic010G188000 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic001G373000--Sobic010G188000 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic008G068100 Sobic008G068100 Sobic004G215900--Sobic008G068100 Sobic004G215900--Sobic006G236000 Sobic009G191500 Sobic009G191500 Sobic004G215900--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic004G215900--Sobic008G111600 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic004G215900--Sobic002G043000 Sobic010G188000--Sobic001G373000 Sobic010G188000--Sobic004G038100 Sobic010G188000--Sobic002G371600 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic004G315500 Sobic004G315500 Sobic010G188000--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic003G259600--Sobic003G361400 Sobic003G360300 Sobic003G360300 Sobic003G259600--Sobic003G360300 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic001G334100 Sobic001G334100 Sobic003G259600--Sobic001G334100 Sobic001G373800--Sobic002G371600 Sobic001G373800--Sobic005G010900 Sobic001G373800--Sobic006G033101 Sobic001G373800--Sobic004G038100 Sobic006G029100 Sobic006G029100 Sobic001G373800--Sobic006G029100 Sobic001G373800--Sobic006G181800 Sobic001G373800--Sobic001G373000 Sobic001G373800--Sobic001G451300 Sobic001G373800--Sobic009G104900 Sobic009G190200 Sobic009G190200 Sobic006G280100--Sobic009G190200 Sobic002G219900 Sobic002G219900 Sobic006G280100--Sobic002G219900 Sobic004G043750 Sobic004G043750 Sobic006G280100--Sobic004G043750 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic007G125700 Sobic007G125700 Sobic006G280100--Sobic007G125700 Sobic002G079100 Sobic002G079100 Sobic006G280100--Sobic002G079100 Sobic008G080500 Sobic008G080500 Sobic006G280100--Sobic008G080500 Sobic009G104900--Sobic006G033101 Sobic009G104900--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic009G104900--Sobic002G132600 Sobic009G104900--Sobic002G126800 Sobic009G104900--Sobic004G038100 Sobic005G199200 Sobic005G199200 Sobic009G104900--Sobic005G199200 Sobic004G085000 Sobic004G085000 Sobic009G104900--Sobic004G085000 Sobic009G104900--Sobic001G373800 Sobic009G104900--Sobic002G430300
Octagon: transcription factors


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