Gene annotation
Transcriptome id Sobic.009G104900.1
Synonym EMB2771
Functional annotation -
UniProt A0A1B6P7Q5
Pfam PF12859
Panther DB PTHR12827
NCBI CDD -
KEGG Orthology K03348; anaphase-promoting complex subunit 1
Gene Ontology GO:0005680; anaphase-promoting complex


Orthologs (automatic annotation)
TAIR AT5G05560 : E3 ubiquitin ligase, putative
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a043431
Brachypodium PNT71495 , PNT71496 , KQK06766 , KQK06767 , KQK06768 , KQK06769
Barley HORVU1Hr1G059780.29 , HORVU1Hr1G059780.28 , HORVU1Hr1G059780.21 , HORVU1Hr1G059780.20 , HORVU1Hr1G059780.23 , HORVU1Hr1G059780.22 , HORVU1Hr1G059780.25 , HORVU1Hr1G059780.24 , HORVU1Hr1G059780.27 , HORVU1Hr1G059780.26 , HORVU1Hr1G059780.38 , HORVU1Hr1G059780.39 , HORVU1Hr1G059780.36 , HORVU1Hr1G059780.37 , HORVU1Hr1G059780.34 , HORVU1Hr1G059780.35 , HORVU1Hr1G059780.32 , HORVU1Hr1G059780.33 , HORVU1Hr1G059780.30 , HORVU1Hr1G059780.31 , HORVU1Hr1G059780.49 , HORVU1Hr1G059780.48 , HORVU1Hr1G059780.43 , HORVU1Hr1G059780.42 , HORVU1Hr1G059780.41 , HORVU1Hr1G059780.40 , HORVU1Hr1G059780.47 , HORVU1Hr1G059780.46 , HORVU1Hr1G059780.45 , HORVU1Hr1G059780.44 , HORVU1Hr1G059780.8 , HORVU1Hr1G059780.9 , HORVU1Hr1G059780.6 , HORVU1Hr1G059780.7 , HORVU1Hr1G059780.4 , HORVU1Hr1G059780.5 , HORVU1Hr1G059780.2 , HORVU1Hr1G059780.3 , HORVU1Hr1G059780.1 , HORVU1Hr1G059780.58 , HORVU1Hr1G059780.59 , HORVU1Hr1G059780.50 , HORVU1Hr1G059780.51 , HORVU1Hr1G059780.52 , HORVU1Hr1G059780.53 , HORVU1Hr1G059780.54 , HORVU1Hr1G059780.55 , HORVU1Hr1G059780.56 , HORVU1Hr1G059780.57 , HORVU1Hr1G059780.69 , HORVU1Hr1G059780.68 , HORVU1Hr1G059780.65 , HORVU1Hr1G059780.64 , HORVU1Hr1G059780.67 , HORVU1Hr1G059780.66 , HORVU1Hr1G059780.61 , HORVU1Hr1G059780.60 , HORVU1Hr1G059780.63 , HORVU1Hr1G059780.62 , HORVU1Hr1G059780.82 , HORVU1Hr1G059780.81 , HORVU1Hr1G059780.80 , HORVU1Hr1G059780.72 , HORVU1Hr1G059780.73 , HORVU1Hr1G059780.70 , HORVU1Hr1G059780.71 , HORVU1Hr1G059780.76 , HORVU1Hr1G059780.77 , HORVU1Hr1G059780.74 , HORVU1Hr1G059780.75 , HORVU1Hr1G059780.78 , HORVU1Hr1G059780.79 , HORVU1Hr1G059780.12 , HORVU1Hr1G059770.1 , HORVU1Hr1G059780.14 , HORVU1Hr1G059780.15 , HORVU1Hr1G059780.16 , HORVU1Hr1G059780.17 , HORVU1Hr1G059780.10 , HORVU1Hr1G059780.11 , HORVU1Hr1G059780.13 , HORVU1Hr1G059780.18 , HORVU1Hr1G059780.19
Wheat TraesCS1A02G225100 , TraesCS1D02G226500 , TraesCS1B02G238300
Populus -


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cDNA sequences
Sobic.009G104900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
2 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
3 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
4 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
6 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
7 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
8 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
9 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
10 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
11 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
12 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
13 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
14 Sobic.003G052800 RST1, putative, expressed -
15 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
16 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
17 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
18 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
19 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
20 Sobic.002G254800 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III


Gene co-expression network
sample Sobic009G104900 Sobic009G104900 Sobic006G033101 Sobic006G033101 Sobic009G104900--Sobic006G033101 Sobic001G373000 Sobic001G373000 Sobic009G104900--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic009G104900--Sobic002G132600 Sobic002G126800 Sobic002G126800 Sobic009G104900--Sobic002G126800 Sobic004G038100 Sobic004G038100 Sobic009G104900--Sobic004G038100 Sobic005G199200 Sobic005G199200 Sobic009G104900--Sobic005G199200 Sobic004G085000 Sobic004G085000 Sobic009G104900--Sobic004G085000 Sobic001G373800 Sobic001G373800 Sobic009G104900--Sobic001G373800 Sobic002G430300 Sobic002G430300 Sobic009G104900--Sobic002G430300 Sobic006G033101--Sobic004G038100 Sobic006G033101--Sobic009G104900 Sobic006G033101--Sobic001G373800 Sobic006G181800 Sobic006G181800 Sobic006G033101--Sobic006G181800 Sobic002G371600 Sobic002G371600 Sobic006G033101--Sobic002G371600 Sobic006G033101--Sobic001G373000 Sobic006G033101--Sobic002G126800 Sobic006G033101--Sobic002G430300 Sobic006G280100 Sobic006G280100 Sobic006G033101--Sobic006G280100 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic002G132600--Sobic009G104900 Sobic003G432300 Sobic003G432300 Sobic002G132600--Sobic003G432300 Sobic002G132600--Sobic005G028100 Sobic002G132600--Sobic001G373000 Sobic002G132600--Sobic002G126800 Sobic002G132600--Sobic004G038100 Sobic006G059500 Sobic006G059500 Sobic002G132600--Sobic006G059500 Sobic002G254800 Sobic002G254800 Sobic002G132600--Sobic002G254800 Sobic010G250800 Sobic010G250800 Sobic002G132600--Sobic010G250800 Sobic002G126800--Sobic003G432300 Sobic002G126800--Sobic005G028100 Sobic002G126800--Sobic001G373000 Sobic002G126800--Sobic009G104900 Sobic002G126800--Sobic002G132600 Sobic002G155100 Sobic002G155100 Sobic002G126800--Sobic002G155100 Sobic002G126800--Sobic006G033101 Sobic007G069700 Sobic007G069700 Sobic002G126800--Sobic007G069700 Sobic005G088900 Sobic005G088900 Sobic002G126800--Sobic005G088900 Sobic004G038100--Sobic006G033101 Sobic004G038100--Sobic006G181800 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic004G038100--Sobic010G188000 Sobic004G038100--Sobic003G259600 Sobic004G038100--Sobic001G373800 Sobic004G038100--Sobic006G280100 Sobic004G038100--Sobic009G104900 Sobic001G090300 Sobic001G090300 Sobic005G199200--Sobic001G090300 Sobic003G184400 Sobic003G184400 Sobic005G199200--Sobic003G184400 Sobic004G128200 Sobic004G128200 Sobic005G199200--Sobic004G128200 Sobic001G334100 Sobic001G334100 Sobic005G199200--Sobic001G334100 Sobic005G199200--Sobic009G104900 Sobic005G199200--Sobic001G373000 Sobic010G278600 Sobic010G278600 Sobic005G199200--Sobic010G278600 Sobic002G142600 Sobic002G142600 Sobic005G199200--Sobic002G142600 Sobic003G246000 Sobic003G246000 Sobic005G199200--Sobic003G246000 Sobic001G145400 Sobic001G145400 Sobic004G085000--Sobic001G145400 Sobic010G114900 Sobic010G114900 Sobic004G085000--Sobic010G114900 Sobic006G185200 Sobic006G185200 Sobic004G085000--Sobic006G185200 Sobic003G199300 Sobic003G199300 Sobic004G085000--Sobic003G199300 Sobic005G010900 Sobic005G010900 Sobic004G085000--Sobic005G010900 Sobic001G219900 Sobic001G219900 Sobic004G085000--Sobic001G219900 Sobic004G085000--Sobic002G430300 Sobic009G101200 Sobic009G101200 Sobic004G085000--Sobic009G101200 Sobic006G086600 Sobic006G086600 Sobic004G085000--Sobic006G086600 Sobic001G373800--Sobic002G371600 Sobic001G373800--Sobic005G010900 Sobic001G373800--Sobic006G033101 Sobic001G373800--Sobic004G038100 Sobic006G029100 Sobic006G029100 Sobic001G373800--Sobic006G029100 Sobic001G373800--Sobic006G181800 Sobic001G373800--Sobic001G373000 Sobic001G451300 Sobic001G451300 Sobic001G373800--Sobic001G451300 Sobic001G373800--Sobic009G104900 Sobic004G141800 Sobic004G141800 Sobic002G430300--Sobic004G141800 Sobic001G393700 Sobic001G393700 Sobic002G430300--Sobic001G393700 Sobic003G405500 Sobic003G405500 Sobic002G430300--Sobic003G405500 Sobic003G152400 Sobic003G152400 Sobic002G430300--Sobic003G152400 Sobic002G430300--Sobic001G145400 Sobic005G133800 Sobic005G133800 Sobic002G430300--Sobic005G133800 Sobic001G087600 Sobic001G087600 Sobic002G430300--Sobic001G087600 Sobic006G224800 Sobic006G224800 Sobic002G430300--Sobic006G224800 Sobic002G145800 Sobic002G145800 Sobic002G430300--Sobic002G145800
Octagon: transcription factors


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