Gene annotation
Transcriptome id Sobic.002G254800.2,Sobic.002G254800.1
Synonym Sb02g029000
Functional annotation DNA topoisomerase 3 protein, putative, expressed
UniProt C5X4M3
Pfam PF01751 PF01131
Panther DB PTHR11390 PTHR11390:SF20
NCBI CDD -
KEGG Orthology K03165; DNA topoisomerase III
Gene Ontology GO:0006265; DNA topological change GO:0003916DNA topoisomerase activity GO:0003677DNA binding GO:0003917DNA topoisomerase type I (single strand cut, ATP-independent) activity


Orthologs (automatic annotation)
TAIR AT2G32000 : DNA topoisomerase, type IA, core
RAP-DB (Rice) LOC_Os09g32450.1 : DNA topoisomerase 3 protein, putative, expressed
MaizeGDB (Corn) Zm00025a047540
Brachypodium PNT64880 , PNT64881 , KQJ90878 , KQJ90876 , KQJ90877 , PNT64879
Barley HORVU5Hr1G075340.8 , HORVU5Hr1G075340.9 , HORVU5Hr1G075340.1 , HORVU5Hr1G075340.2 , HORVU5Hr1G075340.3 , HORVU5Hr1G075340.4 , HORVU5Hr1G075340.5 , HORVU5Hr1G075340.6 , HORVU5Hr1G075340.7 , HORVU5Hr1G075340.12 , HORVU5Hr1G075340.13 , HORVU5Hr1G075340.10 , HORVU5Hr1G075340.15
Wheat TraesCS5B02G277600 , TraesCS5A02G278200 , TraesCS5D02G285200 , TraesCS5D02G285200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
2 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
3 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
4 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -
5 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
6 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
7 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
8 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
9 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
10 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
11 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
12 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
13 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
14 Sobic.008G164700 - -
15 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
16 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
17 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
18 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
20 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic002G254800 Sobic002G254800 Sobic003G161800 Sobic003G161800 Sobic002G254800--Sobic003G161800 Sobic002G132600 Sobic002G132600 Sobic002G254800--Sobic002G132600 Sobic001G373000 Sobic001G373000 Sobic002G254800--Sobic001G373000 Sobic010G236200 Sobic010G236200 Sobic002G254800--Sobic010G236200 Sobic003G259600 Sobic003G259600 Sobic002G254800--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic002G254800--Sobic001G373800 Sobic006G033101 Sobic006G033101 Sobic002G254800--Sobic006G033101 Sobic004G038100 Sobic004G038100 Sobic002G254800--Sobic004G038100 Sobic009G032200 Sobic009G032200 Sobic002G254800--Sobic009G032200 Sobic003G161800--Sobic002G254800 Sobic003G161800--Sobic001G373000 Sobic009G030400 Sobic009G030400 Sobic003G161800--Sobic009G030400 Sobic006G179400 Sobic006G179400 Sobic003G161800--Sobic006G179400 Sobic003G180100 Sobic003G180100 Sobic003G161800--Sobic003G180100 Sobic003G161800--Sobic010G236200 Sobic005G030100 Sobic005G030100 Sobic003G161800--Sobic005G030100 Sobic009G113100 Sobic009G113100 Sobic003G161800--Sobic009G113100 Sobic001G115500 Sobic001G115500 Sobic003G161800--Sobic001G115500 Sobic009G104900 Sobic009G104900 Sobic002G132600--Sobic009G104900 Sobic003G432300 Sobic003G432300 Sobic002G132600--Sobic003G432300 Sobic005G028100 Sobic005G028100 Sobic002G132600--Sobic005G028100 Sobic002G132600--Sobic001G373000 Sobic002G126800 Sobic002G126800 Sobic002G132600--Sobic002G126800 Sobic002G132600--Sobic004G038100 Sobic006G059500 Sobic006G059500 Sobic002G132600--Sobic006G059500 Sobic002G132600--Sobic002G254800 Sobic010G250800 Sobic010G250800 Sobic002G132600--Sobic010G250800 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic001G373000--Sobic005G028100 Sobic010G236200--Sobic009G032200 Sobic010G269300 Sobic010G269300 Sobic010G236200--Sobic010G269300 Sobic010G149600 Sobic010G149600 Sobic010G236200--Sobic010G149600 Sobic004G043750 Sobic004G043750 Sobic010G236200--Sobic004G043750 Sobic003G221500 Sobic003G221500 Sobic010G236200--Sobic003G221500 Sobic004G111000 Sobic004G111000 Sobic010G236200--Sobic004G111000 Sobic010G236200--Sobic002G254800 Sobic009G257500 Sobic009G257500 Sobic010G236200--Sobic009G257500 Sobic007G125700 Sobic007G125700 Sobic010G236200--Sobic007G125700 Sobic003G259600--Sobic003G361400 Sobic003G360300 Sobic003G360300 Sobic003G259600--Sobic003G360300 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic003G259600--Sobic004G038100 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic001G334100 Sobic001G334100 Sobic003G259600--Sobic001G334100 Sobic002G371600 Sobic002G371600 Sobic001G373800--Sobic002G371600 Sobic005G010900 Sobic005G010900 Sobic001G373800--Sobic005G010900 Sobic001G373800--Sobic006G033101 Sobic001G373800--Sobic004G038100 Sobic006G029100 Sobic006G029100 Sobic001G373800--Sobic006G029100 Sobic006G181800 Sobic006G181800 Sobic001G373800--Sobic006G181800 Sobic001G373800--Sobic001G373000 Sobic001G451300 Sobic001G451300 Sobic001G373800--Sobic001G451300 Sobic001G373800--Sobic009G104900 Sobic006G033101--Sobic004G038100 Sobic006G033101--Sobic009G104900 Sobic006G033101--Sobic001G373800 Sobic006G033101--Sobic006G181800 Sobic006G033101--Sobic002G371600 Sobic006G033101--Sobic001G373000 Sobic006G033101--Sobic002G126800 Sobic002G430300 Sobic002G430300 Sobic006G033101--Sobic002G430300 Sobic006G280100 Sobic006G280100 Sobic006G033101--Sobic006G280100 Sobic004G038100--Sobic006G033101 Sobic004G038100--Sobic006G181800 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic004G038100--Sobic010G188000 Sobic004G038100--Sobic003G259600 Sobic004G038100--Sobic001G373800 Sobic004G038100--Sobic006G280100 Sobic004G038100--Sobic009G104900 Sobic009G032200--Sobic010G236200 Sobic010G233000 Sobic010G233000 Sobic009G032200--Sobic010G233000 Sobic009G032200--Sobic010G269300 Sobic009G032200--Sobic004G043750 Sobic008G057000 Sobic008G057000 Sobic009G032200--Sobic008G057000 Sobic009G032200--Sobic009G257500 Sobic009G032200--Sobic003G221500 Sobic010G215900 Sobic010G215900 Sobic009G032200--Sobic010G215900 Sobic001G135500 Sobic001G135500 Sobic009G032200--Sobic001G135500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.