Gene annotation
Transcriptome id Sobic.003G028400.1
Synonym Sb03g002670
Functional annotation OsFBX234 - F-box domain containing protein, expressed
UniProt C5XLT4
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF148
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g23900.1 : OsFBX234 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004212
Brachypodium PNT76932 , PNT76931
Barley HORVU2Hr1G062360.1 , HORVU2Hr1G062360.2 , HORVU6Hr1G077470.6 , HORVU5Hr1G122000.2 , HORVU5Hr1G122000.5 , HORVU5Hr1G122000.6 , HORVU5Hr1G122000.7 , HORVU6Hr1G077450.3 , HORVU6Hr1G077450.4 , HORVU4Hr1G043620.3 , HORVU4Hr1G043620.2 , HORVU4Hr1G043620.1 , HORVU4Hr1G043620.4 , HORVU4Hr1G022880.2 , HORVU4Hr1G022880.1 , HORVU6Hr1G014370.6 , HORVU6Hr1G014370.5 , HORVU6Hr1G077450.7 , HORVU6Hr1G077470.3 , HORVU6Hr1G077470.5 , HORVU6Hr1G077470.4 , HORVU6Hr1G077450.1 , HORVU6Hr1G077450.2 , HORVU6Hr1G077450.5 , HORVU6Hr1G077450.6 , HORVU2Hr1G024620.1 , HORVU6Hr1G014370.9 , HORVU6Hr1G014370.8 , HORVU6Hr1G014370.7 , HORVU6Hr1G014370.4 , HORVU6Hr1G014370.3 , HORVU6Hr1G014370.2 , HORVU6Hr1G014370.1 , HORVU6Hr1G077470.2 , HORVU6Hr1G077470.1
Wheat TraesCS6A02G083600 , TraesCS6D02G294100 , TraesCS6A02G010500 , TraesCS4A02G215800 , TraesCS6D02G077200 , TraesCS5A02G487500 , TraesCS6A02G083600 , TraesCS4B02G100400 , TraesCS4D02G097000 , TraesCS4D02G097000 , TraesCS4B02G100500 , TraesCSU02G142000 , TraesCS1A02G260600 , TraesCS6D02G061200 , TraesCS6A02G083500 , TraesCS2B02G512800 , TraesCS4A02G215700 , TraesCS1B02G271200 , TraesCS5B02G505500 , TraesCS5B02G505500 , TraesCS2D02G486000 , TraesCS6B02G073700 , TraesCS7A02G049900 , TraesCS5D02G541300 , TraesCS5D02G541300 , TraesCS6A02G314800 , TraesCS5D02G343700 , TraesCS5B02G525700 , TraesCS4A02G332700 , TraesCS1D02G296900 , TraesCS4D02G097100 , TraesCS1D02G260600 , TraesCS4A02G435700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G129500 expressed protein -
2 Sobic.003G331000 exostosin family domain containing protein, expressed -
3 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
4 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
5 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
6 Sobic.002G123600 expressed protein -
7 Sobic.001G465500 radical SAM enzyme, putative, expressed -
8 Sobic.007G030600 NOL1/NOP2/sun family protein, putative, expressed -
9 Sobic.001G242300 expressed protein -
10 Sobic.004G313700 acetyltransferase, GNAT family, putative, expressed -
11 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
12 Sobic.007G036800 xylosyltransferase, putative, expressed -
13 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -
14 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
15 Sobic.007G167800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroxy-acid dehydratase, putative, expressed K01687: dihydroxy-acid dehydratase
16 Sobic.009G122900 alpha 1,3-xylosyltransferase, putative, expressed K11714: rhamnogalacturonan II specific xylosyltransferase
17 Sobic.002G043000 HEN1, putative, expressed -
18 Sobic.005G088900 AGAP007117-PA, putative, expressed -
19 Sobic.003G113900 zinc finger matrin-type protein 5, putative, expressed K13152: U11/U12 small nuclear ribonucleoprotein 20 kDa protein
20 Sobic.003G392100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptidase, putative, expressed K01392: thimet oligopeptidase


Gene co-expression network
sample Sobic003G028400 Sobic003G028400 Sobic004G129500 Sobic004G129500 Sobic003G028400--Sobic004G129500 Sobic003G331000 Sobic003G331000 Sobic003G028400--Sobic003G331000 Sobic003G259600 Sobic003G259600 Sobic003G028400--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic003G028400--Sobic001G123600 Sobic007G031300 Sobic007G031300 Sobic003G028400--Sobic007G031300 Sobic002G123600 Sobic002G123600 Sobic003G028400--Sobic002G123600 Sobic001G465500 Sobic001G465500 Sobic003G028400--Sobic001G465500 Sobic007G030600 Sobic007G030600 Sobic003G028400--Sobic007G030600 Sobic001G242300 Sobic001G242300 Sobic003G028400--Sobic001G242300 Sobic007G036800 Sobic007G036800 Sobic004G129500--Sobic007G036800 Sobic010G103500 Sobic010G103500 Sobic004G129500--Sobic010G103500 Sobic001G296800 Sobic001G296800 Sobic004G129500--Sobic001G296800 Sobic004G129500--Sobic003G028400 Sobic003G411700 Sobic003G411700 Sobic004G129500--Sobic003G411700 Sobic002G426100 Sobic002G426100 Sobic004G129500--Sobic002G426100 Sobic004G129500--Sobic002G123600 Sobic002G043000 Sobic002G043000 Sobic004G129500--Sobic002G043000 Sobic001G361200 Sobic001G361200 Sobic004G129500--Sobic001G361200 Sobic003G331000--Sobic003G259600 Sobic009G122900 Sobic009G122900 Sobic003G331000--Sobic009G122900 Sobic003G331000--Sobic003G028400 Sobic003G331000--Sobic002G123600 Sobic003G331000--Sobic001G123600 Sobic003G331000--Sobic001G242300 Sobic005G160200 Sobic005G160200 Sobic003G331000--Sobic005G160200 Sobic003G298900 Sobic003G298900 Sobic003G331000--Sobic003G298900 Sobic003G360300 Sobic003G360300 Sobic003G331000--Sobic003G360300 Sobic003G361400 Sobic003G361400 Sobic003G259600--Sobic003G361400 Sobic003G259600--Sobic003G360300 Sobic001G373000 Sobic001G373000 Sobic003G259600--Sobic001G373000 Sobic003G259600--Sobic003G331000 Sobic004G038100 Sobic004G038100 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic001G334100 Sobic001G334100 Sobic003G259600--Sobic001G334100 Sobic006G191200 Sobic006G191200 Sobic001G123600--Sobic006G191200 Sobic001G229300 Sobic001G229300 Sobic001G123600--Sobic001G229300 Sobic001G123600--Sobic003G360300 Sobic007G034200 Sobic007G034200 Sobic001G123600--Sobic007G034200 Sobic002G386900 Sobic002G386900 Sobic001G123600--Sobic002G386900 Sobic001G123600--Sobic010G269300 Sobic009G120400 Sobic009G120400 Sobic001G123600--Sobic009G120400 Sobic003G299500 Sobic003G299500 Sobic001G123600--Sobic003G299500 Sobic003G010900 Sobic003G010900 Sobic001G123600--Sobic003G010900 Sobic008G169400 Sobic008G169400 Sobic007G031300--Sobic008G169400 Sobic001G211500 Sobic001G211500 Sobic007G031300--Sobic001G211500 Sobic007G031300--Sobic004G129500 Sobic007G031300--Sobic001G296800 Sobic002G430900 Sobic002G430900 Sobic007G031300--Sobic002G430900 Sobic007G031300--Sobic003G028400 Sobic001G210000 Sobic001G210000 Sobic007G031300--Sobic001G210000 Sobic003G153900 Sobic003G153900 Sobic007G031300--Sobic003G153900 Sobic003G212600 Sobic003G212600 Sobic007G031300--Sobic003G212600 Sobic006G127200 Sobic006G127200 Sobic002G123600--Sobic006G127200 Sobic008G090400 Sobic008G090400 Sobic002G123600--Sobic008G090400 Sobic004G306100 Sobic004G306100 Sobic002G123600--Sobic004G306100 Sobic002G095300 Sobic002G095300 Sobic002G123600--Sobic002G095300 Sobic002G271400 Sobic002G271400 Sobic002G123600--Sobic002G271400 Sobic003G397100 Sobic003G397100 Sobic002G123600--Sobic003G397100 Sobic002G123600--Sobic001G242300 Sobic002G123600--Sobic003G411700 Sobic002G123600--Sobic004G129500 Sobic008G078000 Sobic008G078000 Sobic001G465500--Sobic008G078000 Sobic002G335500 Sobic002G335500 Sobic001G465500--Sobic002G335500 Sobic004G078500 Sobic004G078500 Sobic001G465500--Sobic004G078500 Sobic001G465500--Sobic003G028400 Sobic002G208400 Sobic002G208400 Sobic001G465500--Sobic002G208400 Sobic004G030400 Sobic004G030400 Sobic001G465500--Sobic004G030400 Sobic001G465500--Sobic003G331000 Sobic003G129300 Sobic003G129300 Sobic001G465500--Sobic003G129300 Sobic001G436300 Sobic001G436300 Sobic001G465500--Sobic001G436300 Sobic003G113400 Sobic003G113400 Sobic007G030600--Sobic003G113400 Sobic007G030600--Sobic003G028400 Sobic008G039000 Sobic008G039000 Sobic007G030600--Sobic008G039000 Sobic007G146600 Sobic007G146600 Sobic007G030600--Sobic007G146600 Sobic002G182000 Sobic002G182000 Sobic007G030600--Sobic002G182000 Sobic002G399900 Sobic002G399900 Sobic007G030600--Sobic002G399900 Sobic003G113900 Sobic003G113900 Sobic007G030600--Sobic003G113900 Sobic001G413100 Sobic001G413100 Sobic007G030600--Sobic001G413100 Sobic001G343000 Sobic001G343000 Sobic007G030600--Sobic001G343000 Sobic001G242300--Sobic003G397100 Sobic006G262700 Sobic006G262700 Sobic001G242300--Sobic006G262700 Sobic001G242300--Sobic002G123600 Sobic004G256900 Sobic004G256900 Sobic001G242300--Sobic004G256900 Sobic001G242300--Sobic008G169400 Sobic001G242300--Sobic003G331000 Sobic001G242300--Sobic001G361200 Sobic001G242300--Sobic009G120400 Sobic006G237500 Sobic006G237500 Sobic001G242300--Sobic006G237500
Octagon: transcription factors


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