Gene annotation
Transcriptome id Sobic.003G113900.1
Synonym Sb03g009590
Functional annotation zinc finger matrin-type protein 5, putative, expressed
UniProt C5XFS5
Pfam PF00642 PF06220
Panther DB PTHR16465 PTHR16465:SF0
NCBI CDD KOG3454; U1 snRNP-specific protein C
KEGG Orthology K13152; U11/U12 small nuclear ribonucleoprotein 20 kDa protein
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G26749 : C2H2 and C2HC zinc fingers superfamily protein
RAP-DB (Rice) LOC_Os01g14870.1 : zinc finger matrin-type protein 5, putative, expressed
MaizeGDB (Corn) Zm00025a035355
Brachypodium KQK03615 , KQK03617
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -
2 Sobic.007G036800 xylosyltransferase, putative, expressed -
3 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
4 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
5 Sobic.007G030600 NOL1/NOP2/sun family protein, putative, expressed -
6 Sobic.007G072100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBL44 - F-box domain and LRR containing protein, expressed -
7 Sobic.004G129500 expressed protein -
8 Sobic.007G167800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroxy-acid dehydratase, putative, expressed K01687: dihydroxy-acid dehydratase
9 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
10 Sobic.006G029400 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.007G146600 conserved oligomeric Golgi complex component 3, putative, expressed -
12 Sobic.003G331000 exostosin family domain containing protein, expressed -
13 Sobic.004G050300 FAD dependent oxidoreductase domain containing protein, expressed -
14 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
15 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
16 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
17 Sobic.009G122900 alpha 1,3-xylosyltransferase, putative, expressed K11714: rhamnogalacturonan II specific xylosyltransferase
18 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
19 Sobic.008G000600 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
20 Sobic.003G129300 uridine kinase, putative, expressed -


Gene co-expression network
sample Sobic003G113900 Sobic003G113900 Sobic002G399900 Sobic002G399900 Sobic003G113900--Sobic002G399900 Sobic007G036800 Sobic007G036800 Sobic003G113900--Sobic007G036800 Sobic003G028400 Sobic003G028400 Sobic003G113900--Sobic003G028400 Sobic010G059700 Sobic010G059700 Sobic003G113900--Sobic010G059700 Sobic007G030600 Sobic007G030600 Sobic003G113900--Sobic007G030600 Sobic007G072100 Sobic007G072100 Sobic003G113900--Sobic007G072100 Sobic004G129500 Sobic004G129500 Sobic003G113900--Sobic004G129500 Sobic007G167800 Sobic007G167800 Sobic003G113900--Sobic007G167800 Sobic006G127500 Sobic006G127500 Sobic003G113900--Sobic006G127500 Sobic006G265600 Sobic006G265600 Sobic002G399900--Sobic006G265600 Sobic010G172400 Sobic010G172400 Sobic002G399900--Sobic010G172400 Sobic002G182000 Sobic002G182000 Sobic002G399900--Sobic002G182000 Sobic002G142700 Sobic002G142700 Sobic002G399900--Sobic002G142700 Sobic003G222700 Sobic003G222700 Sobic002G399900--Sobic003G222700 Sobic001G115500 Sobic001G115500 Sobic002G399900--Sobic001G115500 Sobic001G474400 Sobic001G474400 Sobic002G399900--Sobic001G474400 Sobic001G123600 Sobic001G123600 Sobic002G399900--Sobic001G123600 Sobic001G507200 Sobic001G507200 Sobic002G399900--Sobic001G507200 Sobic007G036800--Sobic004G129500 Sobic010G103500 Sobic010G103500 Sobic007G036800--Sobic010G103500 Sobic004G145600 Sobic004G145600 Sobic007G036800--Sobic004G145600 Sobic008G112100 Sobic008G112100 Sobic007G036800--Sobic008G112100 Sobic007G036800--Sobic010G059700 Sobic007G010200 Sobic007G010200 Sobic007G036800--Sobic007G010200 Sobic004G350200 Sobic004G350200 Sobic007G036800--Sobic004G350200 Sobic002G123600 Sobic002G123600 Sobic007G036800--Sobic002G123600 Sobic004G256300 Sobic004G256300 Sobic007G036800--Sobic004G256300 Sobic003G028400--Sobic004G129500 Sobic003G331000 Sobic003G331000 Sobic003G028400--Sobic003G331000 Sobic003G259600 Sobic003G259600 Sobic003G028400--Sobic003G259600 Sobic003G028400--Sobic001G123600 Sobic007G031300 Sobic007G031300 Sobic003G028400--Sobic007G031300 Sobic003G028400--Sobic002G123600 Sobic001G465500 Sobic001G465500 Sobic003G028400--Sobic001G465500 Sobic003G028400--Sobic007G030600 Sobic001G242300 Sobic001G242300 Sobic003G028400--Sobic001G242300 Sobic010G059700--Sobic007G036800 Sobic002G306600 Sobic002G306600 Sobic010G059700--Sobic002G306600 Sobic009G063800 Sobic009G063800 Sobic010G059700--Sobic009G063800 Sobic003G224300 Sobic003G224300 Sobic010G059700--Sobic003G224300 Sobic007G146600 Sobic007G146600 Sobic010G059700--Sobic007G146600 Sobic010G059700--Sobic003G222700 Sobic003G148900 Sobic003G148900 Sobic010G059700--Sobic003G148900 Sobic010G059700--Sobic004G145600 Sobic007G022700 Sobic007G022700 Sobic010G059700--Sobic007G022700 Sobic003G113400 Sobic003G113400 Sobic007G030600--Sobic003G113400 Sobic007G030600--Sobic003G028400 Sobic008G039000 Sobic008G039000 Sobic007G030600--Sobic008G039000 Sobic007G030600--Sobic007G146600 Sobic007G030600--Sobic002G182000 Sobic007G030600--Sobic002G399900 Sobic007G030600--Sobic003G113900 Sobic001G413100 Sobic001G413100 Sobic007G030600--Sobic001G413100 Sobic001G343000 Sobic001G343000 Sobic007G030600--Sobic001G343000 Sobic003G411700 Sobic003G411700 Sobic007G072100--Sobic003G411700 Sobic003G343200 Sobic003G343200 Sobic007G072100--Sobic003G343200 Sobic002G253900 Sobic002G253900 Sobic007G072100--Sobic002G253900 Sobic003G298900 Sobic003G298900 Sobic007G072100--Sobic003G298900 Sobic004G306100 Sobic004G306100 Sobic007G072100--Sobic004G306100 Sobic001G033300 Sobic001G033300 Sobic007G072100--Sobic001G033300 Sobic002G271400 Sobic002G271400 Sobic007G072100--Sobic002G271400 Sobic004G014100 Sobic004G014100 Sobic007G072100--Sobic004G014100 Sobic001G425200 Sobic001G425200 Sobic007G072100--Sobic001G425200 Sobic004G129500--Sobic007G036800 Sobic004G129500--Sobic010G103500 Sobic001G296800 Sobic001G296800 Sobic004G129500--Sobic001G296800 Sobic004G129500--Sobic003G028400 Sobic004G129500--Sobic003G411700 Sobic002G426100 Sobic002G426100 Sobic004G129500--Sobic002G426100 Sobic004G129500--Sobic002G123600 Sobic002G043000 Sobic002G043000 Sobic004G129500--Sobic002G043000 Sobic001G361200 Sobic001G361200 Sobic004G129500--Sobic001G361200 Sobic004G050300 Sobic004G050300 Sobic007G167800--Sobic004G050300 Sobic007G167800--Sobic003G028400 Sobic001G507000 Sobic001G507000 Sobic007G167800--Sobic001G507000 Sobic007G167800--Sobic007G072100 Sobic007G167800--Sobic002G253900 Sobic003G119900 Sobic003G119900 Sobic007G167800--Sobic003G119900 Sobic006G127200 Sobic006G127200 Sobic007G167800--Sobic006G127200 Sobic002G126800 Sobic002G126800 Sobic007G167800--Sobic002G126800 Sobic005G068800 Sobic005G068800 Sobic007G167800--Sobic005G068800 Sobic001G436300 Sobic001G436300 Sobic006G127500--Sobic001G436300 Sobic001G157600 Sobic001G157600 Sobic006G127500--Sobic001G157600 Sobic006G251600 Sobic006G251600 Sobic006G127500--Sobic006G251600 Sobic006G127500--Sobic003G028400 Sobic003G098200 Sobic003G098200 Sobic006G127500--Sobic003G098200 Sobic004G343600 Sobic004G343600 Sobic006G127500--Sobic004G343600 Sobic001G097400 Sobic001G097400 Sobic006G127500--Sobic001G097400 Sobic001G235700 Sobic001G235700 Sobic006G127500--Sobic001G235700 Sobic001G107300 Sobic001G107300 Sobic006G127500--Sobic001G107300
Octagon: transcription factors


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