Gene annotation
Transcriptome id Sobic.002G399900.1
Synonym Sb02g041460
Functional annotation OsRhmbd13 - Putative Rhomboid homologue, expressed
UniProt C5X440 , A0A109NDE7 , A1E9U4
Pfam PF08551
Panther DB PTHR13377 PTHR13377:SF4
NCBI CDD KOG2890; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006890retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT3G07950 : rhomboid protein-related
RAP-DB (Rice) LOC_Os07g46170.1 : OsRhmbd13 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a026500 , Zm00025a015332 , Zm00025a039728
Brachypodium -
Barley HORVU2Hr1G023840.2
Wheat TraesCS2D02G138200 , TraesCS2B02G159600 , TraesCS2A02G135700
Populus -


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cDNA sequences
Sobic.002G399900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
2 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
3 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
4 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
5 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
6 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
7 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
8 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
9 Sobic.001G507200 PIR, putative, expressed K05749: cytoplasmic FMR1 interacting protein
10 Sobic.004G194100 expressed protein -
11 Sobic.003G113900 zinc finger matrin-type protein 5, putative, expressed K13152: U11/U12 small nuclear ribonucleoprotein 20 kDa protein
12 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
13 Sobic.001G343000 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
14 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
15 Sobic.004G129500 expressed protein -
16 Sobic.007G146600 conserved oligomeric Golgi complex component 3, putative, expressed -
17 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
18 Sobic.005G114800 protein transport protein, putative, expressed K14007: protein transport protein SEC24
19 Sobic.002G208400 regulator protein, putative, expressed -
20 Sobic.006G282200 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed K12666: OST1, oligosaccharyltransferase complex subunit alpha (ribophorin I)


Gene co-expression network
sample Sobic002G399900 Sobic002G399900 Sobic006G265600 Sobic006G265600 Sobic002G399900--Sobic006G265600 Sobic010G172400 Sobic010G172400 Sobic002G399900--Sobic010G172400 Sobic002G182000 Sobic002G182000 Sobic002G399900--Sobic002G182000 Sobic002G142700 Sobic002G142700 Sobic002G399900--Sobic002G142700 Sobic003G222700 Sobic003G222700 Sobic002G399900--Sobic003G222700 Sobic001G115500 Sobic001G115500 Sobic002G399900--Sobic001G115500 Sobic001G474400 Sobic001G474400 Sobic002G399900--Sobic001G474400 Sobic001G123600 Sobic001G123600 Sobic002G399900--Sobic001G123600 Sobic001G507200 Sobic001G507200 Sobic002G399900--Sobic001G507200 Sobic003G397900 Sobic003G397900 Sobic006G265600--Sobic003G397900 Sobic006G265600--Sobic001G474400 Sobic006G265600--Sobic002G399900 Sobic003G005900 Sobic003G005900 Sobic006G265600--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic006G265600--Sobic001G151600 Sobic002G075900 Sobic002G075900 Sobic006G265600--Sobic002G075900 Sobic002G160700 Sobic002G160700 Sobic006G265600--Sobic002G160700 Sobic009G120500 Sobic009G120500 Sobic006G265600--Sobic009G120500 Sobic002G364900 Sobic002G364900 Sobic006G265600--Sobic002G364900 Sobic001G467100 Sobic001G467100 Sobic010G172400--Sobic001G467100 Sobic010G172400--Sobic003G222700 Sobic010G172400--Sobic002G399900 Sobic006G091000 Sobic006G091000 Sobic010G172400--Sobic006G091000 Sobic010G172400--Sobic002G182000 Sobic005G114500 Sobic005G114500 Sobic010G172400--Sobic005G114500 Sobic010G172400--Sobic001G474400 Sobic001G097900 Sobic001G097900 Sobic010G172400--Sobic001G097900 Sobic001G012900 Sobic001G012900 Sobic010G172400--Sobic001G012900 Sobic009G063800 Sobic009G063800 Sobic002G182000--Sobic009G063800 Sobic002G182000--Sobic002G399900 Sobic001G343000 Sobic001G343000 Sobic002G182000--Sobic001G343000 Sobic001G203600 Sobic001G203600 Sobic002G182000--Sobic001G203600 Sobic007G146600 Sobic007G146600 Sobic002G182000--Sobic007G146600 Sobic003G130900 Sobic003G130900 Sobic002G182000--Sobic003G130900 Sobic002G066800 Sobic002G066800 Sobic002G182000--Sobic002G066800 Sobic002G182000--Sobic010G172400 Sobic003G113300 Sobic003G113300 Sobic002G182000--Sobic003G113300 Sobic002G142700--Sobic002G399900 Sobic007G051400 Sobic007G051400 Sobic002G142700--Sobic007G051400 Sobic002G208400 Sobic002G208400 Sobic002G142700--Sobic002G208400 Sobic004G256300 Sobic004G256300 Sobic002G142700--Sobic004G256300 Sobic003G221500 Sobic003G221500 Sobic002G142700--Sobic003G221500 Sobic002G142700--Sobic003G222700 Sobic001G229300 Sobic001G229300 Sobic002G142700--Sobic001G229300 Sobic001G373000 Sobic001G373000 Sobic002G142700--Sobic001G373000 Sobic003G360300 Sobic003G360300 Sobic002G142700--Sobic003G360300 Sobic003G222700--Sobic004G256300 Sobic003G222700--Sobic001G467100 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic007G022700 Sobic007G022700 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic003G222700--Sobic001G229300 Sobic003G222700--Sobic002G142700 Sobic003G222700--Sobic002G399900 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G008500 Sobic001G008500 Sobic001G115500--Sobic001G008500 Sobic003G008600 Sobic003G008600 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G436300 Sobic001G436300 Sobic001G115500--Sobic001G436300 Sobic001G115500--Sobic001G373000 Sobic005G110499 Sobic005G110499 Sobic001G474400--Sobic005G110499 Sobic001G474400--Sobic003G397900 Sobic007G145400 Sobic007G145400 Sobic001G474400--Sobic007G145400 Sobic001G474400--Sobic001G097900 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic010G223400 Sobic010G223400 Sobic001G474400--Sobic010G223400 Sobic001G474400--Sobic001G467100 Sobic001G474400--Sobic006G265600 Sobic006G191200 Sobic006G191200 Sobic001G123600--Sobic006G191200 Sobic001G123600--Sobic001G229300 Sobic001G123600--Sobic003G360300 Sobic007G034200 Sobic007G034200 Sobic001G123600--Sobic007G034200 Sobic002G386900 Sobic002G386900 Sobic001G123600--Sobic002G386900 Sobic010G269300 Sobic010G269300 Sobic001G123600--Sobic010G269300 Sobic009G120400 Sobic009G120400 Sobic001G123600--Sobic009G120400 Sobic003G299500 Sobic003G299500 Sobic001G123600--Sobic003G299500 Sobic003G010900 Sobic003G010900 Sobic001G123600--Sobic003G010900 Sobic009G052100 Sobic009G052100 Sobic001G507200--Sobic009G052100 Sobic009G049200 Sobic009G049200 Sobic001G507200--Sobic009G049200 Sobic006G173200 Sobic006G173200 Sobic001G507200--Sobic006G173200 Sobic004G315700 Sobic004G315700 Sobic001G507200--Sobic004G315700 Sobic006G071628 Sobic006G071628 Sobic001G507200--Sobic006G071628 Sobic001G296800 Sobic001G296800 Sobic001G507200--Sobic001G296800 Sobic001G385400 Sobic001G385400 Sobic001G507200--Sobic001G385400 Sobic008G192700 Sobic008G192700 Sobic001G507200--Sobic008G192700 Sobic001G507200--Sobic002G399900
Octagon: transcription factors


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