Gene annotation
Transcriptome id Sobic.001G343000.1,Sobic.001G343000.2
Synonym Sb01g032940, 3BETAHSD/D2, AT3BETAHSD/D2
Functional annotation sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed
UniProt A0A1B6QMN4 , A0A1B6QMP8
Pfam PF02453 PF16363
Panther DB PTHR10366:SF471 PTHR10366 PTHR10366 PTHR10366:SF471
NCBI CDD KOG1430; C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases
KEGG Orthology K07748; NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26260 : 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
RAP-DB (Rice) LOC_Os03g29170.1 : sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed
MaizeGDB (Corn) Zm00025a012202 , Zm00025a034002 , Zm00025a003365 , Zm00025a038871 , Zm00025a038870 , Zm00025a002790 , Zm00025a017481
Brachypodium KQK21338 , KQK21339 , KQK21340
Barley HORVU6Hr1G031080.18 , HORVU6Hr1G031080.19 , HORVU6Hr1G031080.16 , HORVU6Hr1G031080.17 , HORVU6Hr1G031080.15 , HORVU6Hr1G031080.12 , HORVU6Hr1G031080.13 , HORVU6Hr1G031080.11 , HORVU6Hr1G031080.20 , HORVU6Hr1G031080.6 , HORVU4Hr1G036960.4 , HORVU4Hr1G036960.5 , HORVU4Hr1G036960.6 , HORVU4Hr1G036960.1 , HORVU4Hr1G036960.2 , HORVU4Hr1G036960.3 , HORVU6Hr1G031080.8 , HORVU6Hr1G031080.9 , HORVU6Hr1G031080.7 , HORVU6Hr1G031080.5 , HORVU6Hr1G031080.2
Wheat TraesCS4D02G157900 , TraesCS4D02G157900 , TraesCS4D02G157900 , TraesCS4D02G157900 , TraesCS4B02G151900 , TraesCS4B02G151900 , TraesCS4B02G151900 , TraesCS4B02G151900 , TraesCS4A02G147500 , TraesCS6B02G182000 , TraesCS4D02G157900
Populus PNT32961 , PNT32962


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cDNA sequences
Sobic.001G343000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G146600 conserved oligomeric Golgi complex component 3, putative, expressed -
2 Sobic.003G393200 expressed protein -
3 Sobic.007G048700 stomatin-like protein 2, putative, expressed -
4 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
5 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
6 Sobic.010G028400 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
7 Sobic.002G070300 expressed protein -
8 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.001G012900 brefeldin A-sensitive Golgi protein-like, putative, expressed -
10 Sobic.001G193100 expressed protein -
11 Sobic.004G060300 DNA binding protein, putative, expressed -
12 Sobic.007G053400 nuclear matrix protein 1, putative, expressed -
13 Sobic.010G080900 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
14 Sobic.002G398500 Mo25, putative, expressed K08272: CAB39, calcium binding protein 39
15 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
16 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
17 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
18 Sobic.003G190200 Sec1 family transport protein, putative, expressed -
19 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -
20 Sobic.003G205100 helicase, putative, expressed K11136: regulator of telomere elongation helicase 1


Gene co-expression network
sample Sobic001G343000 Sobic001G343000 Sobic007G146600 Sobic007G146600 Sobic001G343000--Sobic007G146600 Sobic003G393200 Sobic003G393200 Sobic001G343000--Sobic003G393200 Sobic007G048700 Sobic007G048700 Sobic001G343000--Sobic007G048700 Sobic002G182000 Sobic002G182000 Sobic001G343000--Sobic002G182000 Sobic007G030100 Sobic007G030100 Sobic001G343000--Sobic007G030100 Sobic010G028400 Sobic010G028400 Sobic001G343000--Sobic010G028400 Sobic002G070300 Sobic002G070300 Sobic001G343000--Sobic002G070300 Sobic008G132200 Sobic008G132200 Sobic001G343000--Sobic008G132200 Sobic001G012900 Sobic001G012900 Sobic001G343000--Sobic001G012900 Sobic007G148400 Sobic007G148400 Sobic007G146600--Sobic007G148400 Sobic007G146600--Sobic001G343000 Sobic006G222500 Sobic006G222500 Sobic007G146600--Sobic006G222500 Sobic009G063800 Sobic009G063800 Sobic007G146600--Sobic009G063800 Sobic007G146600--Sobic002G182000 Sobic003G150900 Sobic003G150900 Sobic007G146600--Sobic003G150900 Sobic007G146600--Sobic003G393200 Sobic005G114800 Sobic005G114800 Sobic007G146600--Sobic005G114800 Sobic010G250000 Sobic010G250000 Sobic007G146600--Sobic010G250000 Sobic003G190200 Sobic003G190200 Sobic003G393200--Sobic003G190200 Sobic005G123400 Sobic005G123400 Sobic003G393200--Sobic005G123400 Sobic001G051400 Sobic001G051400 Sobic003G393200--Sobic001G051400 Sobic006G237500 Sobic006G237500 Sobic003G393200--Sobic006G237500 Sobic002G066800 Sobic002G066800 Sobic003G393200--Sobic002G066800 Sobic005G087300 Sobic005G087300 Sobic003G393200--Sobic005G087300 Sobic001G043200 Sobic001G043200 Sobic003G393200--Sobic001G043200 Sobic003G393200--Sobic001G343000 Sobic009G059400 Sobic009G059400 Sobic003G393200--Sobic009G059400 Sobic003G167000 Sobic003G167000 Sobic007G048700--Sobic003G167000 Sobic007G048700--Sobic002G070300 Sobic001G035400 Sobic001G035400 Sobic007G048700--Sobic001G035400 Sobic009G220000 Sobic009G220000 Sobic007G048700--Sobic009G220000 Sobic007G003100 Sobic007G003100 Sobic007G048700--Sobic007G003100 Sobic001G347700 Sobic001G347700 Sobic007G048700--Sobic001G347700 Sobic007G048700--Sobic008G132200 Sobic007G048700--Sobic001G343000 Sobic001G013200 Sobic001G013200 Sobic007G048700--Sobic001G013200 Sobic002G182000--Sobic009G063800 Sobic002G399900 Sobic002G399900 Sobic002G182000--Sobic002G399900 Sobic002G182000--Sobic001G343000 Sobic001G203600 Sobic001G203600 Sobic002G182000--Sobic001G203600 Sobic002G182000--Sobic007G146600 Sobic003G130900 Sobic003G130900 Sobic002G182000--Sobic003G130900 Sobic002G182000--Sobic002G066800 Sobic010G172400 Sobic010G172400 Sobic002G182000--Sobic010G172400 Sobic003G113300 Sobic003G113300 Sobic002G182000--Sobic003G113300 Sobic007G030100--Sobic003G190200 Sobic002G147200 Sobic002G147200 Sobic007G030100--Sobic002G147200 Sobic003G394500 Sobic003G394500 Sobic007G030100--Sobic003G394500 Sobic003G117800 Sobic003G117800 Sobic007G030100--Sobic003G117800 Sobic001G385000 Sobic001G385000 Sobic007G030100--Sobic001G385000 Sobic007G172700 Sobic007G172700 Sobic007G030100--Sobic007G172700 Sobic001G424800 Sobic001G424800 Sobic007G030100--Sobic001G424800 Sobic006G232800 Sobic006G232800 Sobic007G030100--Sobic006G232800 Sobic003G428000 Sobic003G428000 Sobic007G030100--Sobic003G428000 Sobic010G028400--Sobic001G343000 Sobic010G028400--Sobic001G347700 Sobic010G028400--Sobic003G167000 Sobic007G208000 Sobic007G208000 Sobic010G028400--Sobic007G208000 Sobic010G028400--Sobic007G048700 Sobic007G201000 Sobic007G201000 Sobic010G028400--Sobic007G201000 Sobic004G017900 Sobic004G017900 Sobic010G028400--Sobic004G017900 Sobic001G188000 Sobic001G188000 Sobic010G028400--Sobic001G188000 Sobic003G260600 Sobic003G260600 Sobic010G028400--Sobic003G260600 Sobic002G070300--Sobic008G132200 Sobic007G118500 Sobic007G118500 Sobic002G070300--Sobic007G118500 Sobic001G543400 Sobic001G543400 Sobic002G070300--Sobic001G543400 Sobic002G070300--Sobic003G260600 Sobic001G011000 Sobic001G011000 Sobic002G070300--Sobic001G011000 Sobic003G159700 Sobic003G159700 Sobic002G070300--Sobic003G159700 Sobic002G154800 Sobic002G154800 Sobic002G070300--Sobic002G154800 Sobic001G378800 Sobic001G378800 Sobic002G070300--Sobic001G378800 Sobic002G153000 Sobic002G153000 Sobic002G070300--Sobic002G153000 Sobic008G132200--Sobic002G070300 Sobic008G132200--Sobic003G260600 Sobic002G255400 Sobic002G255400 Sobic008G132200--Sobic002G255400 Sobic003G372200 Sobic003G372200 Sobic008G132200--Sobic003G372200 Sobic008G132200--Sobic001G385000 Sobic002G167100 Sobic002G167100 Sobic008G132200--Sobic002G167100 Sobic008G132200--Sobic001G378800 Sobic008G132200--Sobic006G232800 Sobic010G253200 Sobic010G253200 Sobic008G132200--Sobic010G253200 Sobic003G293000 Sobic003G293000 Sobic001G012900--Sobic003G293000 Sobic001G193100 Sobic001G193100 Sobic001G012900--Sobic001G193100 Sobic005G059500 Sobic005G059500 Sobic001G012900--Sobic005G059500 Sobic001G161700 Sobic001G161700 Sobic001G012900--Sobic001G161700 Sobic004G060300 Sobic004G060300 Sobic001G012900--Sobic004G060300 Sobic010G223400 Sobic010G223400 Sobic001G012900--Sobic010G223400 Sobic003G346400 Sobic003G346400 Sobic001G012900--Sobic003G346400 Sobic001G335000 Sobic001G335000 Sobic001G012900--Sobic001G335000 Sobic009G122500 Sobic009G122500 Sobic001G012900--Sobic009G122500
Octagon: transcription factors


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