Gene annotation
Transcriptome id Sobic.007G053400.1
Synonym Sb07g004300
Functional annotation nuclear matrix protein 1, putative, expressed
UniProt C5YHF9
Pfam PF06694
Panther DB PTHR14352 PTHR14352:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G17620 : -
RAP-DB (Rice) LOC_Os01g64920.1 : nuclear matrix protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a030043
Brachypodium KQK10794
Barley HORVU6Hr1G032860.8 , HORVU6Hr1G030130.2 , HORVU6Hr1G030130.1 , HORVU3Hr1G082780.8 , HORVU3Hr1G082780.9 , HORVU3Hr1G082780.1 , HORVU3Hr1G082780.2 , HORVU3Hr1G082780.3 , HORVU3Hr1G082780.4 , HORVU3Hr1G082780.5 , HORVU3Hr1G082780.6 , HORVU3Hr1G082780.7
Wheat TraesCS3D02G374000 , TraesCS3A02G380800 , TraesCS3A02G380800 , TraesCS3B02G413500 , TraesCS3B02G413500 , TraesCS3B02G413500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
2 Sobic.001G343000 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
3 Sobic.003G211700 expressed protein -
4 Sobic.004G353400 leucine-rich repeat-containing protein 40, putative, expressed -
5 Sobic.010G074900 G protein coupled receptor, putative, expressed -
6 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
7 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
8 Sobic.007G201000 methyltransferase domain containing protein, expressed -
9 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
10 Sobic.010G098600 heat shock protein DnaJ, putative, expressed -
11 Sobic.003G223500 WD domain, G-beta repeat domain containing protein, expressed K14299: nucleoporin SEH1
12 Sobic.005G178950 - -
13 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
14 Sobic.008G176800 expressed protein -
15 Sobic.010G046400 glyoxalase/bleomycin resistance protein/dioxygenase, putative, expressed -
16 Sobic.004G242700 heat shock protein DnaJ, putative, expressed -
17 Sobic.007G212800 frataxin, putative, expressed K19054: frataxin
18 Sobic.009G108400 CAAX amino terminal protease family protein, putative, expressed K08658: RCE1, prenyl protein peptidase
19 Sobic.007G070300 OsFBL41 - F-box domain and LRR containing protein, expressed -
20 Sobic.007G048700 stomatin-like protein 2, putative, expressed -


Gene co-expression network
sample Sobic007G053400 Sobic007G053400 Sobic006G091000 Sobic006G091000 Sobic007G053400--Sobic006G091000 Sobic001G343000 Sobic001G343000 Sobic007G053400--Sobic001G343000 Sobic003G211700 Sobic003G211700 Sobic007G053400--Sobic003G211700 Sobic004G353400 Sobic004G353400 Sobic007G053400--Sobic004G353400 Sobic010G074900 Sobic010G074900 Sobic007G053400--Sobic010G074900 Sobic010G172400 Sobic010G172400 Sobic007G053400--Sobic010G172400 Sobic007G139400 Sobic007G139400 Sobic007G053400--Sobic007G139400 Sobic007G201000 Sobic007G201000 Sobic007G053400--Sobic007G201000 Sobic009G040800 Sobic009G040800 Sobic007G053400--Sobic009G040800 Sobic006G091000--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic006G091000--Sobic005G178950 Sobic006G091000--Sobic004G353400 Sobic005G040900 Sobic005G040900 Sobic006G091000--Sobic005G040900 Sobic004G347100 Sobic004G347100 Sobic006G091000--Sobic004G347100 Sobic006G091000--Sobic010G074900 Sobic006G091000--Sobic007G139400 Sobic006G091000--Sobic010G172400 Sobic005G114400 Sobic005G114400 Sobic006G091000--Sobic005G114400 Sobic007G146600 Sobic007G146600 Sobic001G343000--Sobic007G146600 Sobic003G393200 Sobic003G393200 Sobic001G343000--Sobic003G393200 Sobic007G048700 Sobic007G048700 Sobic001G343000--Sobic007G048700 Sobic002G182000 Sobic002G182000 Sobic001G343000--Sobic002G182000 Sobic007G030100 Sobic007G030100 Sobic001G343000--Sobic007G030100 Sobic010G028400 Sobic010G028400 Sobic001G343000--Sobic010G028400 Sobic002G070300 Sobic002G070300 Sobic001G343000--Sobic002G070300 Sobic008G132200 Sobic008G132200 Sobic001G343000--Sobic008G132200 Sobic001G012900 Sobic001G012900 Sobic001G343000--Sobic001G012900 Sobic007G115900 Sobic007G115900 Sobic003G211700--Sobic007G115900 Sobic004G316800 Sobic004G316800 Sobic003G211700--Sobic004G316800 Sobic003G211700--Sobic007G053400 Sobic007G158900 Sobic007G158900 Sobic003G211700--Sobic007G158900 Sobic003G113400 Sobic003G113400 Sobic003G211700--Sobic003G113400 Sobic007G212800 Sobic007G212800 Sobic003G211700--Sobic007G212800 Sobic003G211700--Sobic005G178950 Sobic010G048900 Sobic010G048900 Sobic003G211700--Sobic010G048900 Sobic003G131300 Sobic003G131300 Sobic003G211700--Sobic003G131300 Sobic004G353400--Sobic006G091000 Sobic004G353400--Sobic009G040800 Sobic004G353400--Sobic005G178950 Sobic004G042900 Sobic004G042900 Sobic004G353400--Sobic004G042900 Sobic004G353400--Sobic007G053400 Sobic001G100800 Sobic001G100800 Sobic004G353400--Sobic001G100800 Sobic007G016900 Sobic007G016900 Sobic004G353400--Sobic007G016900 Sobic006G144000 Sobic006G144000 Sobic004G353400--Sobic006G144000 Sobic002G299100 Sobic002G299100 Sobic004G353400--Sobic002G299100 Sobic004G345700 Sobic004G345700 Sobic010G074900--Sobic004G345700 Sobic003G205501 Sobic003G205501 Sobic010G074900--Sobic003G205501 Sobic001G408700 Sobic001G408700 Sobic010G074900--Sobic001G408700 Sobic001G193100 Sobic001G193100 Sobic010G074900--Sobic001G193100 Sobic004G084500 Sobic004G084500 Sobic010G074900--Sobic004G084500 Sobic010G074900--Sobic006G091000 Sobic010G074900--Sobic005G040900 Sobic004G007300 Sobic004G007300 Sobic010G074900--Sobic004G007300 Sobic003G398400 Sobic003G398400 Sobic010G074900--Sobic003G398400 Sobic001G467100 Sobic001G467100 Sobic010G172400--Sobic001G467100 Sobic003G222700 Sobic003G222700 Sobic010G172400--Sobic003G222700 Sobic002G399900 Sobic002G399900 Sobic010G172400--Sobic002G399900 Sobic010G172400--Sobic006G091000 Sobic010G172400--Sobic002G182000 Sobic005G114500 Sobic005G114500 Sobic010G172400--Sobic005G114500 Sobic001G474400 Sobic001G474400 Sobic010G172400--Sobic001G474400 Sobic001G097900 Sobic001G097900 Sobic010G172400--Sobic001G097900 Sobic010G172400--Sobic001G012900 Sobic007G139400--Sobic004G347100 Sobic002G033600 Sobic002G033600 Sobic007G139400--Sobic002G033600 Sobic007G188900 Sobic007G188900 Sobic007G139400--Sobic007G188900 Sobic007G139400--Sobic009G040800 Sobic007G088900 Sobic007G088900 Sobic007G139400--Sobic007G088900 Sobic007G139400--Sobic005G040900 Sobic002G334600 Sobic002G334600 Sobic007G139400--Sobic002G334600 Sobic009G129600 Sobic009G129600 Sobic007G139400--Sobic009G129600 Sobic003G354100 Sobic003G354100 Sobic007G139400--Sobic003G354100 Sobic001G286100 Sobic001G286100 Sobic007G201000--Sobic001G286100 Sobic003G167000 Sobic003G167000 Sobic007G201000--Sobic003G167000 Sobic001G348000 Sobic001G348000 Sobic007G201000--Sobic001G348000 Sobic002G401700 Sobic002G401700 Sobic007G201000--Sobic002G401700 Sobic007G201000--Sobic007G158900 Sobic001G347700 Sobic001G347700 Sobic007G201000--Sobic001G347700 Sobic003G402900 Sobic003G402900 Sobic007G201000--Sobic003G402900 Sobic007G201000--Sobic001G343000 Sobic007G192100 Sobic007G192100 Sobic007G201000--Sobic007G192100 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic009G040800--Sobic006G091000 Sobic009G040800--Sobic005G040900 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic009G040800--Sobic001G042200 Sobic009G040800--Sobic004G353400
Octagon: transcription factors


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