Gene annotation
Transcriptome id Sobic.003G223500.1
Synonym SEH1H, Sb03g028180
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XR43
Pfam PF00400
Panther DB PTHR11024
NCBI CDD KOG2445; Nuclear pore complex component (sc Seh1)
KEGG Orthology K14299; nucleoporin SEH1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G64350 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g43250.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028387
Brachypodium KQK08771 , KQK08770 , KQK08769
Barley HORVU3Hr1G055410.1 , HORVU3Hr1G055410.2 , HORVU3Hr1G055410.3 , HORVU3Hr1G055410.4
Wheat TraesCS3A02G223900 , TraesCS3B02G253300 , TraesCS3D02G229700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G223500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
2 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
3 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
4 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
5 Sobic.001G168100 OsFBD13 - F-box and FBD domain containing protein, expressed -
6 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
7 Sobic.007G043400 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase
8 Sobic.007G053400 nuclear matrix protein 1, putative, expressed -
9 Sobic.002G218700 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
10 Sobic.003G115100 importin subunit alpha, putative, expressed -
11 Sobic.010G063566 - K11111: TERF2, telomeric repeat-binding factor 2
12 Sobic.010G046400 glyoxalase/bleomycin resistance protein/dioxygenase, putative, expressed -
13 Sobic.007G212800 frataxin, putative, expressed K19054: frataxin
14 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
15 Sobic.006G097700 mitochondrial carrier protein, putative, expressed K15112: SLC25A27, solute carrier family 25 (mitochondrial uncoupling protein), member 27
16 Sobic.002G133000 delta14-sterol reductase, putative, expressed K00222: TM7SF2, Delta14-sterol reductase
17 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
18 Sobic.001G247200 - -
19 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
20 Sobic.010G251100 - K03257: translation initiation factor 4A


Gene co-expression network
sample Sobic003G223500 Sobic003G223500 Sobic001G061800 Sobic001G061800 Sobic003G223500--Sobic001G061800 Sobic005G178700 Sobic005G178700 Sobic003G223500--Sobic005G178700 Sobic004G011000 Sobic004G011000 Sobic003G223500--Sobic004G011000 Sobic001G226000 Sobic001G226000 Sobic003G223500--Sobic001G226000 Sobic001G168100 Sobic001G168100 Sobic003G223500--Sobic001G168100 Sobic002G334600 Sobic002G334600 Sobic003G223500--Sobic002G334600 Sobic007G043400 Sobic007G043400 Sobic003G223500--Sobic007G043400 Sobic007G053400 Sobic007G053400 Sobic003G223500--Sobic007G053400 Sobic002G218700 Sobic002G218700 Sobic003G223500--Sobic002G218700 Sobic001G408300 Sobic001G408300 Sobic001G061800--Sobic001G408300 Sobic001G061800--Sobic003G223500 Sobic005G088900 Sobic005G088900 Sobic001G061800--Sobic005G088900 Sobic001G024000 Sobic001G024000 Sobic001G061800--Sobic001G024000 Sobic005G028100 Sobic005G028100 Sobic001G061800--Sobic005G028100 Sobic004G047200 Sobic004G047200 Sobic001G061800--Sobic004G047200 Sobic008G009600 Sobic008G009600 Sobic001G061800--Sobic008G009600 Sobic006G251600 Sobic006G251600 Sobic001G061800--Sobic006G251600 Sobic004G287100 Sobic004G287100 Sobic001G061800--Sobic004G287100 Sobic004G227100 Sobic004G227100 Sobic005G178700--Sobic004G227100 Sobic005G178700--Sobic003G223500 Sobic007G143500 Sobic007G143500 Sobic005G178700--Sobic007G143500 Sobic004G235500 Sobic004G235500 Sobic005G178700--Sobic004G235500 Sobic001G401400 Sobic001G401400 Sobic005G178700--Sobic001G401400 Sobic006G067900 Sobic006G067900 Sobic005G178700--Sobic006G067900 Sobic007G030600 Sobic007G030600 Sobic005G178700--Sobic007G030600 Sobic001G370300 Sobic001G370300 Sobic005G178700--Sobic001G370300 Sobic004G226900 Sobic004G226900 Sobic005G178700--Sobic004G226900 Sobic004G011000--Sobic008G009600 Sobic009G040500 Sobic009G040500 Sobic004G011000--Sobic009G040500 Sobic003G115100 Sobic003G115100 Sobic004G011000--Sobic003G115100 Sobic009G046700 Sobic009G046700 Sobic004G011000--Sobic009G046700 Sobic010G251100 Sobic010G251100 Sobic004G011000--Sobic010G251100 Sobic001G010600 Sobic001G010600 Sobic004G011000--Sobic001G010600 Sobic004G011000--Sobic001G370300 Sobic010G247400 Sobic010G247400 Sobic004G011000--Sobic010G247400 Sobic009G193850 Sobic009G193850 Sobic004G011000--Sobic009G193850 Sobic009G030300 Sobic009G030300 Sobic001G226000--Sobic009G030300 Sobic006G278700 Sobic006G278700 Sobic001G226000--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G226000--Sobic006G267300 Sobic001G226000--Sobic003G115100 Sobic002G077900 Sobic002G077900 Sobic001G226000--Sobic002G077900 Sobic009G195200 Sobic009G195200 Sobic001G226000--Sobic009G195200 Sobic003G433500 Sobic003G433500 Sobic001G226000--Sobic003G433500 Sobic001G226000--Sobic001G010600 Sobic004G013600 Sobic004G013600 Sobic001G226000--Sobic004G013600 Sobic002G177500 Sobic002G177500 Sobic001G168100--Sobic002G177500 Sobic001G013300 Sobic001G013300 Sobic001G168100--Sobic001G013300 Sobic004G285000 Sobic004G285000 Sobic001G168100--Sobic004G285000 Sobic002G223300 Sobic002G223300 Sobic001G168100--Sobic002G223300 Sobic001G168100--Sobic003G223500 Sobic001G168100--Sobic007G043400 Sobic003G408300 Sobic003G408300 Sobic001G168100--Sobic003G408300 Sobic002G339800 Sobic002G339800 Sobic001G168100--Sobic002G339800 Sobic001G023800 Sobic001G023800 Sobic001G168100--Sobic001G023800 Sobic002G334600--Sobic002G223300 Sobic002G334600--Sobic009G030300 Sobic007G139400 Sobic007G139400 Sobic002G334600--Sobic007G139400 Sobic007G188900 Sobic007G188900 Sobic002G334600--Sobic007G188900 Sobic003G132700 Sobic003G132700 Sobic002G334600--Sobic003G132700 Sobic002G089900 Sobic002G089900 Sobic002G334600--Sobic002G089900 Sobic003G354100 Sobic003G354100 Sobic002G334600--Sobic003G354100 Sobic009G044900 Sobic009G044900 Sobic002G334600--Sobic009G044900 Sobic002G157200 Sobic002G157200 Sobic002G334600--Sobic002G157200 Sobic002G133000 Sobic002G133000 Sobic007G043400--Sobic002G133000 Sobic004G330600 Sobic004G330600 Sobic007G043400--Sobic004G330600 Sobic001G296800 Sobic001G296800 Sobic007G043400--Sobic001G296800 Sobic009G169200 Sobic009G169200 Sobic007G043400--Sobic009G169200 Sobic007G043400--Sobic001G168100 Sobic007G043400--Sobic003G223500 Sobic002G238500 Sobic002G238500 Sobic007G043400--Sobic002G238500 Sobic006G029400 Sobic006G029400 Sobic007G043400--Sobic006G029400 Sobic008G083400 Sobic008G083400 Sobic007G043400--Sobic008G083400 Sobic006G091000 Sobic006G091000 Sobic007G053400--Sobic006G091000 Sobic001G343000 Sobic001G343000 Sobic007G053400--Sobic001G343000 Sobic003G211700 Sobic003G211700 Sobic007G053400--Sobic003G211700 Sobic004G353400 Sobic004G353400 Sobic007G053400--Sobic004G353400 Sobic010G074900 Sobic010G074900 Sobic007G053400--Sobic010G074900 Sobic010G172400 Sobic010G172400 Sobic007G053400--Sobic010G172400 Sobic007G053400--Sobic007G139400 Sobic007G201000 Sobic007G201000 Sobic007G053400--Sobic007G201000 Sobic009G040800 Sobic009G040800 Sobic007G053400--Sobic009G040800 Sobic003G347300 Sobic003G347300 Sobic002G218700--Sobic003G347300 Sobic010G046400 Sobic010G046400 Sobic002G218700--Sobic010G046400 Sobic001G247200 Sobic001G247200 Sobic002G218700--Sobic001G247200 Sobic002G218700--Sobic009G030300 Sobic010G256000 Sobic010G256000 Sobic002G218700--Sobic010G256000 Sobic003G131200 Sobic003G131200 Sobic002G218700--Sobic003G131200 Sobic004G227500 Sobic004G227500 Sobic002G218700--Sobic004G227500 Sobic009G253400 Sobic009G253400 Sobic002G218700--Sobic009G253400 Sobic004G225700 Sobic004G225700 Sobic002G218700--Sobic004G225700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.