Gene annotation
Transcriptome id Sobic.004G011000.1
Synonym Sb04g001100
Functional annotation expressed protein
UniProt C5XSA0
Pfam PF08772
Panther DB PTHR12814 PTHR12814:SF2
NCBI CDD KOG2463; Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly
KEGG Orthology K11883; RNA-binding protein NOB1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41190 : -
RAP-DB (Rice) LOC_Os02g02360.1 : expressed protein
MaizeGDB (Corn) Zm00025a003770 , Zm00025a018697 , Zm00025a035068
Brachypodium -
Barley -
Wheat TraesCS6B02G053000 , TraesCS6D02G043500 , TraesCS6B02G053000 , TraesCS6A02G037800
Populus -


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cDNA sequences
Sobic.004G011000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
2 Sobic.009G040500 glioma tumor suppressor candidate region gene 2 protein, putative, expressed K14840: NOP53, nucleolar protein 53
3 Sobic.003G115100 importin subunit alpha, putative, expressed -
4 Sobic.009G046700 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
5 Sobic.010G251100 - K03257: translation initiation factor 4A
6 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
7 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
8 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
9 Sobic.009G193850 - -
10 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
11 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
12 Sobic.003G223500 WD domain, G-beta repeat domain containing protein, expressed K14299: nucleoporin SEH1
13 Sobic.007G112000 - -
14 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
15 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
16 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
17 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
18 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
19 Sobic.003G259400 katanin p60 ATPase-containing subunit, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
20 Sobic.010G073200 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein


Gene co-expression network
sample Sobic004G011000 Sobic004G011000 Sobic008G009600 Sobic008G009600 Sobic004G011000--Sobic008G009600 Sobic009G040500 Sobic009G040500 Sobic004G011000--Sobic009G040500 Sobic003G115100 Sobic003G115100 Sobic004G011000--Sobic003G115100 Sobic009G046700 Sobic009G046700 Sobic004G011000--Sobic009G046700 Sobic010G251100 Sobic010G251100 Sobic004G011000--Sobic010G251100 Sobic001G010600 Sobic001G010600 Sobic004G011000--Sobic001G010600 Sobic001G370300 Sobic001G370300 Sobic004G011000--Sobic001G370300 Sobic010G247400 Sobic010G247400 Sobic004G011000--Sobic010G247400 Sobic009G193850 Sobic009G193850 Sobic004G011000--Sobic009G193850 Sobic006G049600 Sobic006G049600 Sobic008G009600--Sobic006G049600 Sobic008G009600--Sobic004G011000 Sobic001G017700 Sobic001G017700 Sobic008G009600--Sobic001G017700 Sobic001G142100 Sobic001G142100 Sobic008G009600--Sobic001G142100 Sobic010G073200 Sobic010G073200 Sobic008G009600--Sobic010G073200 Sobic003G407600 Sobic003G407600 Sobic008G009600--Sobic003G407600 Sobic001G145400 Sobic001G145400 Sobic008G009600--Sobic001G145400 Sobic009G101200 Sobic009G101200 Sobic008G009600--Sobic009G101200 Sobic006G226300 Sobic006G226300 Sobic008G009600--Sobic006G226300 Sobic009G040500--Sobic004G011000 Sobic009G040500--Sobic001G370300 Sobic009G211700 Sobic009G211700 Sobic009G040500--Sobic009G211700 Sobic002G177500 Sobic002G177500 Sobic009G040500--Sobic002G177500 Sobic002G399200 Sobic002G399200 Sobic009G040500--Sobic002G399200 Sobic009G040500--Sobic010G073200 Sobic009G040500--Sobic003G407600 Sobic009G040500--Sobic008G009600 Sobic003G198300 Sobic003G198300 Sobic009G040500--Sobic003G198300 Sobic001G226000 Sobic001G226000 Sobic003G115100--Sobic001G226000 Sobic009G151200 Sobic009G151200 Sobic003G115100--Sobic009G151200 Sobic003G115100--Sobic001G010600 Sobic009G030300 Sobic009G030300 Sobic003G115100--Sobic009G030300 Sobic007G195400 Sobic007G195400 Sobic003G115100--Sobic007G195400 Sobic004G013600 Sobic004G013600 Sobic003G115100--Sobic004G013600 Sobic005G216300 Sobic005G216300 Sobic003G115100--Sobic005G216300 Sobic002G058300 Sobic002G058300 Sobic003G115100--Sobic002G058300 Sobic003G115100--Sobic004G011000 Sobic003G258900 Sobic003G258900 Sobic009G046700--Sobic003G258900 Sobic008G098600 Sobic008G098600 Sobic009G046700--Sobic008G098600 Sobic009G046700--Sobic004G011000 Sobic009G046700--Sobic006G226300 Sobic009G046700--Sobic008G009600 Sobic006G194400 Sobic006G194400 Sobic009G046700--Sobic006G194400 Sobic009G046700--Sobic010G073200 Sobic009G225200 Sobic009G225200 Sobic009G046700--Sobic009G225200 Sobic001G081000 Sobic001G081000 Sobic009G046700--Sobic001G081000 Sobic001G226100 Sobic001G226100 Sobic010G251100--Sobic001G226100 Sobic001G402300 Sobic001G402300 Sobic010G251100--Sobic001G402300 Sobic003G226500 Sobic003G226500 Sobic010G251100--Sobic003G226500 Sobic009G232400 Sobic009G232400 Sobic010G251100--Sobic009G232400 Sobic007G205000 Sobic007G205000 Sobic010G251100--Sobic007G205000 Sobic008G004400 Sobic008G004400 Sobic010G251100--Sobic008G004400 Sobic006G278700 Sobic006G278700 Sobic010G251100--Sobic006G278700 Sobic010G012600 Sobic010G012600 Sobic010G251100--Sobic010G012600 Sobic010G193800 Sobic010G193800 Sobic010G251100--Sobic010G193800 Sobic001G010600--Sobic002G058300 Sobic001G010600--Sobic007G205000 Sobic007G086500 Sobic007G086500 Sobic001G010600--Sobic007G086500 Sobic001G010600--Sobic001G226000 Sobic001G010600--Sobic003G115100 Sobic009G140700 Sobic009G140700 Sobic001G010600--Sobic009G140700 Sobic001G010600--Sobic004G013600 Sobic010G028300 Sobic010G028300 Sobic001G010600--Sobic010G028300 Sobic008G139700 Sobic008G139700 Sobic001G010600--Sobic008G139700 Sobic002G077900 Sobic002G077900 Sobic001G370300--Sobic002G077900 Sobic001G370300--Sobic002G177500 Sobic006G245700 Sobic006G245700 Sobic001G370300--Sobic006G245700 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic003G439800 Sobic003G439800 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic001G259000 Sobic001G259000 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic010G247400--Sobic002G077900 Sobic010G247400--Sobic001G370300 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic001G041200 Sobic001G041200 Sobic009G193850--Sobic001G041200 Sobic009G193850--Sobic004G011000 Sobic006G216000 Sobic006G216000 Sobic009G193850--Sobic006G216000 Sobic007G162800 Sobic007G162800 Sobic009G193850--Sobic007G162800 Sobic002G148300 Sobic002G148300 Sobic009G193850--Sobic002G148300 Sobic001G404200 Sobic001G404200 Sobic009G193850--Sobic001G404200 Sobic003G118400 Sobic003G118400 Sobic009G193850--Sobic003G118400 Sobic008G080000 Sobic008G080000 Sobic009G193850--Sobic008G080000 Sobic006G242300 Sobic006G242300 Sobic009G193850--Sobic006G242300
Octagon: transcription factors


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