Gene annotation
Transcriptome id Sobic.003G259400.1
Synonym FTR, ERH3, ATKTN1, FRC2, FRA2, LUE1, KTN1, BOT1, AAA1, Sb03g031360
Functional annotation katanin p60 ATPase-containing subunit, putative, expressed
UniProt C5XGS4
Pfam PF05496 PF09336
Panther DB PTHR23074 PTHR23074:SF19
NCBI CDD -
KEGG Orthology K07767; katanin p60 ATPase-containing subunit A1
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT1G80350 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g49000.1 : katanin p60 ATPase-containing subunit, putative, expressed
MaizeGDB (Corn) Zm00025a038841 , Zm00025a028013
Brachypodium KQK09212
Barley HORVU3Hr1G063300.1
Wheat TraesCS3A02G265700 , TraesCS3B02G299100 , TraesCS3D02G265900
Populus -


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cDNA sequences
Sobic.003G259400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G231700 GTP binding protein, putative, expressed -
2 Sobic.003G340900 SAG20, putative, expressed -
3 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
4 Sobic.009G226400 dynamin family protein, putative, expressed -
5 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
6 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
7 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
8 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
9 Sobic.K004100 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
11 Sobic.010G269100 zinc finger family protein, putative, expressed -
12 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
13 Sobic.006G257001 - -
14 Sobic.001G422700 "similar to Zinc finger family protein, putative, expressed"(PubMedID : 29862293)@Salt and drought-induced ring finger 1(PubMedID : 26320239)@zinc finger, C3HC4 type domain containing protein, expressed K16283: E3 ubiquitin-protein ligase SDIR1
15 Sobic.002G300700 peptidyl-prolyl cis-trans isomerase, putative, expressed -
16 Sobic.002G268400 expressed protein -
17 Sobic.001G201500 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
18 Sobic.002G143900 OsFBL19 - F-box domain and LRR containing protein, expressed K10273: F-box and leucine-rich repeat protein 7
19 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31
20 Sobic.008G004400 GIL1, putative, expressed -


Gene co-expression network
sample Sobic003G259400 Sobic003G259400 Sobic009G231700 Sobic009G231700 Sobic003G259400--Sobic009G231700 Sobic003G340900 Sobic003G340900 Sobic003G259400--Sobic003G340900 Sobic005G216300 Sobic005G216300 Sobic003G259400--Sobic005G216300 Sobic009G226400 Sobic009G226400 Sobic003G259400--Sobic009G226400 Sobic003G099300 Sobic003G099300 Sobic003G259400--Sobic003G099300 Sobic010G017800 Sobic010G017800 Sobic003G259400--Sobic010G017800 Sobic001G067900 Sobic001G067900 Sobic003G259400--Sobic001G067900 Sobic001G010600 Sobic001G010600 Sobic003G259400--Sobic001G010600 SobicK004100 SobicK004100 Sobic003G259400--SobicK004100 Sobic002G020700 Sobic002G020700 Sobic009G231700--Sobic002G020700 Sobic009G231700--Sobic003G099300 Sobic007G177300 Sobic007G177300 Sobic009G231700--Sobic007G177300 Sobic002G423500 Sobic002G423500 Sobic009G231700--Sobic002G423500 Sobic009G231700--SobicK004100 Sobic004G039600 Sobic004G039600 Sobic009G231700--Sobic004G039600 Sobic001G382600 Sobic001G382600 Sobic009G231700--Sobic001G382600 Sobic001G118200 Sobic001G118200 Sobic009G231700--Sobic001G118200 Sobic010G269100 Sobic010G269100 Sobic009G231700--Sobic010G269100 Sobic003G340900--Sobic010G017800 Sobic003G340900--Sobic003G259400 Sobic001G078100 Sobic001G078100 Sobic003G340900--Sobic001G078100 Sobic002G143900 Sobic002G143900 Sobic003G340900--Sobic002G143900 Sobic006G044000 Sobic006G044000 Sobic003G340900--Sobic006G044000 Sobic001G518400 Sobic001G518400 Sobic003G340900--Sobic001G518400 Sobic003G412300 Sobic003G412300 Sobic003G340900--Sobic003G412300 Sobic007G027700 Sobic007G027700 Sobic003G340900--Sobic007G027700 Sobic003G340900--Sobic005G216300 Sobic005G216300--Sobic003G099300 Sobic005G216300--Sobic007G027700 Sobic005G216300--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic005G216300--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic005G216300--Sobic001G335900 Sobic001G426600 Sobic001G426600 Sobic005G216300--Sobic001G426600 Sobic001G142100 Sobic001G142100 Sobic005G216300--Sobic001G142100 Sobic003G126600 Sobic003G126600 Sobic005G216300--Sobic003G126600 Sobic006G208500 Sobic006G208500 Sobic005G216300--Sobic006G208500 Sobic001G023100 Sobic001G023100 Sobic009G226400--Sobic001G023100 Sobic003G270600 Sobic003G270600 Sobic009G226400--Sobic003G270600 Sobic009G226400--SobicK004100 Sobic009G226400--Sobic001G369000 Sobic002G029300 Sobic002G029300 Sobic009G226400--Sobic002G029300 Sobic009G226400--Sobic001G335900 Sobic006G056200 Sobic006G056200 Sobic009G226400--Sobic006G056200 Sobic009G226400--Sobic004G039600 Sobic001G420800 Sobic001G420800 Sobic009G226400--Sobic001G420800 Sobic003G099300--Sobic010G269100 Sobic003G099300--Sobic004G039600 Sobic003G099300--Sobic005G216300 Sobic003G099300--SobicK004100 Sobic003G099300--Sobic001G369000 Sobic005G115500 Sobic005G115500 Sobic003G099300--Sobic005G115500 Sobic002G256200 Sobic002G256200 Sobic003G099300--Sobic002G256200 Sobic003G099300--Sobic006G056200 Sobic003G099300--Sobic009G231700 Sobic002G313500 Sobic002G313500 Sobic010G017800--Sobic002G313500 Sobic010G017800--Sobic001G518400 Sobic008G139700 Sobic008G139700 Sobic010G017800--Sobic008G139700 Sobic010G017800--Sobic001G335900 Sobic009G229600 Sobic009G229600 Sobic010G017800--Sobic009G229600 Sobic004G325400 Sobic004G325400 Sobic010G017800--Sobic004G325400 Sobic010G017800--Sobic005G216300 Sobic001G371200 Sobic001G371200 Sobic010G017800--Sobic001G371200 Sobic010G017800--Sobic003G340900 Sobic001G105100 Sobic001G105100 Sobic001G067900--Sobic001G105100 Sobic004G072800 Sobic004G072800 Sobic001G067900--Sobic004G072800 Sobic006G257001 Sobic006G257001 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic003G217100 Sobic003G217100 Sobic001G067900--Sobic003G217100 Sobic006G034800 Sobic006G034800 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G237500 Sobic001G237500 Sobic001G067900--Sobic001G237500 Sobic002G058300 Sobic002G058300 Sobic001G010600--Sobic002G058300 Sobic007G205000 Sobic007G205000 Sobic001G010600--Sobic007G205000 Sobic007G086500 Sobic007G086500 Sobic001G010600--Sobic007G086500 Sobic001G226000 Sobic001G226000 Sobic001G010600--Sobic001G226000 Sobic003G115100 Sobic003G115100 Sobic001G010600--Sobic003G115100 Sobic009G140700 Sobic009G140700 Sobic001G010600--Sobic009G140700 Sobic004G013600 Sobic004G013600 Sobic001G010600--Sobic004G013600 Sobic010G028300 Sobic010G028300 Sobic001G010600--Sobic010G028300 Sobic001G010600--Sobic008G139700 SobicK004100--Sobic001G369000 SobicK004100--Sobic004G039600 SobicK004100--Sobic003G099300 SobicK004100--Sobic001G335900 Sobic007G120500 Sobic007G120500 SobicK004100--Sobic007G120500 Sobic009G049400 Sobic009G049400 SobicK004100--Sobic009G049400 Sobic003G240700 Sobic003G240700 SobicK004100--Sobic003G240700 SobicK004100--Sobic009G226400 Sobic001G449900 Sobic001G449900 SobicK004100--Sobic001G449900
Octagon: transcription factors


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