Gene annotation
Transcriptome id Sobic.001G422700.1
Synonym Sb01g039740, SDIR1,SDIR1
Functional annotation "similar to Zinc finger family protein, putative, expressed" (PubMedID : 29862293)
Salt and drought-induced ring finger 1 (PubMedID : 26320239)
zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WQ12
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF48
NCBI CDD -
KEGG Orthology K16283; E3 ubiquitin-protein ligase SDIR1
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G55530 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g16570.2 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001807 , Zm00025a052769
Brachypodium -
Barley HORVU4Hr1G060040.10 , HORVU4Hr1G060040.8 , HORVU4Hr1G060040.1 , HORVU4Hr1G060040.2 , HORVU4Hr1G060040.3 , HORVU4Hr1G060040.4 , HORVU4Hr1G060040.5 , HORVU4Hr1G060040.6 , HORVU4Hr1G060040.7
Wheat TraesCS4A02G096000 , TraesCS4B02G208600 , TraesCS4B02G208600 , TraesCS4B02G208600 , TraesCS4D02G209300 , TraesCS4D02G209300 , TraesCS4D02G209300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G139000 OsFBX237 - F-box domain containing protein, expressed -
2 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
3 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
4 Sobic.003G259400 katanin p60 ATPase-containing subunit, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
5 Sobic.003G247900 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
6 Sobic.004G027000 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
7 Sobic.004G225300 e2f-associated phosphoprotein, putative, expressed -
8 Sobic.001G329300 expressed protein -
9 Sobic.002G272600 TBC domain containing protein, expressed -
10 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
11 Sobic.010G219100 protein kinase APK1B, chloroplast precursor, putative, expressed -
12 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
13 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
14 Sobic.001G350501 - K11253: histone H3
15 Sobic.002G235300 expressed protein -
16 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
17 Sobic.004G141700 expressed protein -
18 Sobic.006G156300 WD-40 repeat family protein, putative, expressed -
19 Sobic.001G208000 expressed protein -
20 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor


Gene co-expression network
sample Sobic001G422700 Sobic001G422700 Sobic002G139000 Sobic002G139000 Sobic001G422700--Sobic002G139000 Sobic001G010600 Sobic001G010600 Sobic001G422700--Sobic001G010600 Sobic001G507400 Sobic001G507400 Sobic001G422700--Sobic001G507400 Sobic003G259400 Sobic003G259400 Sobic001G422700--Sobic003G259400 Sobic003G247900 Sobic003G247900 Sobic001G422700--Sobic003G247900 Sobic004G027000 Sobic004G027000 Sobic001G422700--Sobic004G027000 Sobic004G225300 Sobic004G225300 Sobic001G422700--Sobic004G225300 Sobic001G329300 Sobic001G329300 Sobic001G422700--Sobic001G329300 Sobic002G272600 Sobic002G272600 Sobic001G422700--Sobic002G272600 Sobic002G139000--Sobic004G027000 Sobic002G139000--Sobic001G422700 Sobic001G217100 Sobic001G217100 Sobic002G139000--Sobic001G217100 Sobic006G167300 Sobic006G167300 Sobic002G139000--Sobic006G167300 Sobic006G067700 Sobic006G067700 Sobic002G139000--Sobic006G067700 Sobic009G056300 Sobic009G056300 Sobic002G139000--Sobic009G056300 Sobic001G296800 Sobic001G296800 Sobic002G139000--Sobic001G296800 Sobic010G217100 Sobic010G217100 Sobic002G139000--Sobic010G217100 Sobic002G139000--Sobic004G225300 Sobic002G058300 Sobic002G058300 Sobic001G010600--Sobic002G058300 Sobic007G205000 Sobic007G205000 Sobic001G010600--Sobic007G205000 Sobic007G086500 Sobic007G086500 Sobic001G010600--Sobic007G086500 Sobic001G226000 Sobic001G226000 Sobic001G010600--Sobic001G226000 Sobic003G115100 Sobic003G115100 Sobic001G010600--Sobic003G115100 Sobic009G140700 Sobic009G140700 Sobic001G010600--Sobic009G140700 Sobic004G013600 Sobic004G013600 Sobic001G010600--Sobic004G013600 Sobic010G028300 Sobic010G028300 Sobic001G010600--Sobic010G028300 Sobic008G139700 Sobic008G139700 Sobic001G010600--Sobic008G139700 Sobic001G038100 Sobic001G038100 Sobic001G507400--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic001G507400--Sobic007G117100 Sobic007G191700 Sobic007G191700 Sobic001G507400--Sobic007G191700 Sobic006G120800 Sobic006G120800 Sobic001G507400--Sobic006G120800 Sobic009G258400 Sobic009G258400 Sobic001G507400--Sobic009G258400 Sobic002G014700 Sobic002G014700 Sobic001G507400--Sobic002G014700 Sobic003G420700 Sobic003G420700 Sobic001G507400--Sobic003G420700 Sobic002G204000 Sobic002G204000 Sobic001G507400--Sobic002G204000 Sobic010G154000 Sobic010G154000 Sobic001G507400--Sobic010G154000 Sobic009G231700 Sobic009G231700 Sobic003G259400--Sobic009G231700 Sobic003G340900 Sobic003G340900 Sobic003G259400--Sobic003G340900 Sobic005G216300 Sobic005G216300 Sobic003G259400--Sobic005G216300 Sobic009G226400 Sobic009G226400 Sobic003G259400--Sobic009G226400 Sobic003G099300 Sobic003G099300 Sobic003G259400--Sobic003G099300 Sobic010G017800 Sobic010G017800 Sobic003G259400--Sobic010G017800 Sobic001G067900 Sobic001G067900 Sobic003G259400--Sobic001G067900 Sobic003G259400--Sobic001G010600 SobicK004100 SobicK004100 Sobic003G259400--SobicK004100 Sobic003G038600 Sobic003G038600 Sobic003G247900--Sobic003G038600 Sobic010G219100 Sobic010G219100 Sobic003G247900--Sobic010G219100 Sobic003G247900--Sobic001G507400 Sobic008G111700 Sobic008G111700 Sobic003G247900--Sobic008G111700 Sobic001G285300 Sobic001G285300 Sobic003G247900--Sobic001G285300 Sobic001G532100 Sobic001G532100 Sobic003G247900--Sobic001G532100 Sobic003G247900--Sobic002G272600 Sobic006G094600 Sobic006G094600 Sobic003G247900--Sobic006G094600 Sobic002G077900 Sobic002G077900 Sobic003G247900--Sobic002G077900 Sobic004G027000--Sobic004G225300 Sobic004G206300 Sobic004G206300 Sobic004G027000--Sobic004G206300 Sobic004G027000--Sobic002G139000 Sobic004G027000--Sobic009G056300 Sobic002G394800 Sobic002G394800 Sobic004G027000--Sobic002G394800 Sobic004G027000--Sobic001G422700 Sobic001G280400 Sobic001G280400 Sobic004G027000--Sobic001G280400 Sobic005G164500 Sobic005G164500 Sobic004G027000--Sobic005G164500 Sobic004G184000 Sobic004G184000 Sobic004G027000--Sobic004G184000 Sobic004G225300--Sobic004G027000 Sobic004G225300--Sobic001G422700 Sobic004G225300--Sobic002G394800 Sobic004G225300--Sobic004G206300 Sobic004G225300--Sobic009G056300 Sobic004G212700 Sobic004G212700 Sobic004G225300--Sobic004G212700 Sobic004G225300--Sobic002G139000 Sobic006G252100 Sobic006G252100 Sobic004G225300--Sobic006G252100 Sobic006G179800 Sobic006G179800 Sobic004G225300--Sobic006G179800 Sobic001G329300--Sobic002G204000 Sobic006G011000 Sobic006G011000 Sobic001G329300--Sobic006G011000 Sobic007G226100 Sobic007G226100 Sobic001G329300--Sobic007G226100 Sobic001G329300--Sobic006G252100 Sobic004G226800 Sobic004G226800 Sobic001G329300--Sobic004G226800 Sobic001G329300--Sobic006G094600 Sobic004G316900 Sobic004G316900 Sobic001G329300--Sobic004G316900 Sobic001G350501 Sobic001G350501 Sobic001G329300--Sobic001G350501 Sobic010G193800 Sobic010G193800 Sobic001G329300--Sobic010G193800 Sobic001G061700 Sobic001G061700 Sobic002G272600--Sobic001G061700 Sobic001G080000 Sobic001G080000 Sobic002G272600--Sobic001G080000 Sobic001G143500 Sobic001G143500 Sobic002G272600--Sobic001G143500 Sobic003G405700 Sobic003G405700 Sobic002G272600--Sobic003G405700 Sobic010G105600 Sobic010G105600 Sobic002G272600--Sobic010G105600 Sobic002G272600--Sobic007G205000 Sobic002G272600--Sobic003G038600 Sobic003G350600 Sobic003G350600 Sobic002G272600--Sobic003G350600 Sobic002G272600--Sobic010G219100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.