Gene annotation
Transcriptome id Sobic.001G208000.1,Sobic.001G208000.2
Synonym Sb01g018395
Functional annotation expressed protein
UniProt A0A1B6QK24
Pfam PF02721 PF08646
Panther DB PTHR23273 PTHR23273:SF10
NCBI CDD KOG0851; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G52950 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os07g45750.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU4Hr1G077940.9 , HORVU4Hr1G077940.8 , HORVU4Hr1G077940.1 , HORVU4Hr1G077940.3 , HORVU4Hr1G077940.4 , HORVU4Hr1G077940.7 , HORVU4Hr1G077940.6
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G499000 BTBP1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with pentapeptide repeats, expressed -
2 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
3 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
4 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
5 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
6 Sobic.009G231700 GTP binding protein, putative, expressed -
7 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
8 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9
9 Sobic.001G422700 "similar to Zinc finger family protein, putative, expressed"(PubMedID : 29862293)@Salt and drought-induced ring finger 1(PubMedID : 26320239)@zinc finger, C3HC4 type domain containing protein, expressed K16283: E3 ubiquitin-protein ligase SDIR1
10 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
11 Sobic.002G300700 peptidyl-prolyl cis-trans isomerase, putative, expressed -
12 Sobic.004G320100 expressed protein -
13 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -
14 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
15 Sobic.006G049700 SAM domain family protein, expressed -
16 Sobic.006G252700 protein kinase domain containing protein, expressed -
17 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
18 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
19 Sobic.003G247900 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
20 Sobic.007G004200 PHD-finger domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G208000 Sobic001G208000 Sobic001G499000 Sobic001G499000 Sobic001G208000--Sobic001G499000 Sobic009G207200 Sobic009G207200 Sobic001G208000--Sobic009G207200 Sobic003G021200 Sobic003G021200 Sobic001G208000--Sobic003G021200 Sobic008G145100 Sobic008G145100 Sobic001G208000--Sobic008G145100 Sobic003G005200 Sobic003G005200 Sobic001G208000--Sobic003G005200 Sobic009G231700 Sobic009G231700 Sobic001G208000--Sobic009G231700 Sobic001G542900 Sobic001G542900 Sobic001G208000--Sobic001G542900 Sobic008G129600 Sobic008G129600 Sobic001G208000--Sobic008G129600 Sobic001G422700 Sobic001G422700 Sobic001G208000--Sobic001G422700 Sobic003G214300 Sobic003G214300 Sobic001G499000--Sobic003G214300 Sobic008G103300 Sobic008G103300 Sobic001G499000--Sobic008G103300 Sobic001G499000--Sobic008G129600 Sobic001G061200 Sobic001G061200 Sobic001G499000--Sobic001G061200 Sobic009G226400 Sobic009G226400 Sobic001G499000--Sobic009G226400 Sobic006G056200 Sobic006G056200 Sobic001G499000--Sobic006G056200 Sobic006G044600 Sobic006G044600 Sobic001G499000--Sobic006G044600 Sobic006G278700 Sobic006G278700 Sobic001G499000--Sobic006G278700 Sobic001G023100 Sobic001G023100 Sobic001G499000--Sobic001G023100 Sobic006G094600 Sobic006G094600 Sobic009G207200--Sobic006G094600 Sobic009G207200--Sobic001G061200 Sobic001G358500 Sobic001G358500 Sobic009G207200--Sobic001G358500 Sobic002G029300 Sobic002G029300 Sobic009G207200--Sobic002G029300 Sobic003G005900 Sobic003G005900 Sobic009G207200--Sobic003G005900 Sobic007G217400 Sobic007G217400 Sobic009G207200--Sobic007G217400 Sobic008G072200 Sobic008G072200 Sobic009G207200--Sobic008G072200 Sobic004G075200 Sobic004G075200 Sobic009G207200--Sobic004G075200 Sobic007G022700 Sobic007G022700 Sobic009G207200--Sobic007G022700 Sobic001G010700 Sobic001G010700 Sobic003G021200--Sobic001G010700 Sobic006G222400 Sobic006G222400 Sobic003G021200--Sobic006G222400 Sobic010G017000 Sobic010G017000 Sobic003G021200--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic003G021200--Sobic003G043400 Sobic004G335000 Sobic004G335000 Sobic003G021200--Sobic004G335000 Sobic001G402300 Sobic001G402300 Sobic003G021200--Sobic001G402300 Sobic002G428200 Sobic002G428200 Sobic003G021200--Sobic002G428200 Sobic010G238700 Sobic010G238700 Sobic003G021200--Sobic010G238700 Sobic006G127000 Sobic006G127000 Sobic003G021200--Sobic006G127000 Sobic010G073100 Sobic010G073100 Sobic008G145100--Sobic010G073100 Sobic002G423800 Sobic002G423800 Sobic008G145100--Sobic002G423800 Sobic008G110500 Sobic008G110500 Sobic008G145100--Sobic008G110500 Sobic001G444300 Sobic001G444300 Sobic008G145100--Sobic001G444300 Sobic008G145100--Sobic002G029300 Sobic001G033500 Sobic001G033500 Sobic008G145100--Sobic001G033500 Sobic004G010900 Sobic004G010900 Sobic008G145100--Sobic004G010900 Sobic006G203100 Sobic006G203100 Sobic008G145100--Sobic006G203100 Sobic008G145100--Sobic008G129600 Sobic002G300700 Sobic002G300700 Sobic003G005200--Sobic002G300700 Sobic009G160600 Sobic009G160600 Sobic003G005200--Sobic009G160600 Sobic001G360200 Sobic001G360200 Sobic003G005200--Sobic001G360200 Sobic006G225300 Sobic006G225300 Sobic003G005200--Sobic006G225300 Sobic002G281300 Sobic002G281300 Sobic003G005200--Sobic002G281300 Sobic004G091200 Sobic004G091200 Sobic003G005200--Sobic004G091200 Sobic003G038600 Sobic003G038600 Sobic003G005200--Sobic003G038600 Sobic003G005200--Sobic003G021200 Sobic009G058500 Sobic009G058500 Sobic003G005200--Sobic009G058500 Sobic002G020700 Sobic002G020700 Sobic009G231700--Sobic002G020700 Sobic003G099300 Sobic003G099300 Sobic009G231700--Sobic003G099300 Sobic007G177300 Sobic007G177300 Sobic009G231700--Sobic007G177300 Sobic002G423500 Sobic002G423500 Sobic009G231700--Sobic002G423500 SobicK004100 SobicK004100 Sobic009G231700--SobicK004100 Sobic004G039600 Sobic004G039600 Sobic009G231700--Sobic004G039600 Sobic001G382600 Sobic001G382600 Sobic009G231700--Sobic001G382600 Sobic001G118200 Sobic001G118200 Sobic009G231700--Sobic001G118200 Sobic010G269100 Sobic010G269100 Sobic009G231700--Sobic010G269100 Sobic001G542900--Sobic007G217400 Sobic001G542900--Sobic002G423800 Sobic001G542900--Sobic004G335000 Sobic001G542900--Sobic008G110500 Sobic001G542900--Sobic003G043400 Sobic001G542900--Sobic001G444300 Sobic002G141700 Sobic002G141700 Sobic001G542900--Sobic002G141700 Sobic009G164700 Sobic009G164700 Sobic001G542900--Sobic009G164700 Sobic007G176200 Sobic007G176200 Sobic001G542900--Sobic007G176200 Sobic008G055900 Sobic008G055900 Sobic008G129600--Sobic008G055900 Sobic008G129600--Sobic007G177300 Sobic008G129600--Sobic006G056200 Sobic008G129600--Sobic008G103300 Sobic010G264000 Sobic010G264000 Sobic008G129600--Sobic010G264000 Sobic001G467100 Sobic001G467100 Sobic008G129600--Sobic001G467100 Sobic001G449900 Sobic001G449900 Sobic008G129600--Sobic001G449900 Sobic003G182300 Sobic003G182300 Sobic008G129600--Sobic003G182300 Sobic006G270600 Sobic006G270600 Sobic008G129600--Sobic006G270600 Sobic002G139000 Sobic002G139000 Sobic001G422700--Sobic002G139000 Sobic001G010600 Sobic001G010600 Sobic001G422700--Sobic001G010600 Sobic001G507400 Sobic001G507400 Sobic001G422700--Sobic001G507400 Sobic003G259400 Sobic003G259400 Sobic001G422700--Sobic003G259400 Sobic003G247900 Sobic003G247900 Sobic001G422700--Sobic003G247900 Sobic004G027000 Sobic004G027000 Sobic001G422700--Sobic004G027000 Sobic004G225300 Sobic004G225300 Sobic001G422700--Sobic004G225300 Sobic001G329300 Sobic001G329300 Sobic001G422700--Sobic001G329300 Sobic002G272600 Sobic002G272600 Sobic001G422700--Sobic002G272600
Octagon: transcription factors


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