Gene annotation
Transcriptome id Sobic.003G247900.1
Synonym Sb03g030430
Functional annotation eukaryotic translation initiation factor 3 subunit D, putative, expressed
UniProt C5XFY4
Pfam PF05091
Panther DB PTHR12399
NCBI CDD -
KEGG Orthology K03251; translation initiation factor 3 subunit D
Gene Ontology GO:0005852; eukaryotic translation initiation factor 3 complex GO:0005737cytoplasm GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT4G20980 : Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
RAP-DB (Rice) LOC_Os05g49150.1 : eukaryotic translation initiation factor 3 subunit D, putative, expressed
MaizeGDB (Corn) Zm00025a028142 , Zm00025a044591
Brachypodium KQK04841
Barley HORVU1Hr1G088760.2
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G247900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
2 Sobic.010G219100 protein kinase APK1B, chloroplast precursor, putative, expressed -
3 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
4 Sobic.008G111700 expressed protein -
5 Sobic.001G285300 expressed protein -
6 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
7 Sobic.002G272600 TBC domain containing protein, expressed -
8 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
9 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
10 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
11 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
12 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
13 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
14 Sobic.001G422700 "similar to Zinc finger family protein, putative, expressed"(PubMedID : 29862293)@Salt and drought-induced ring finger 1(PubMedID : 26320239)@zinc finger, C3HC4 type domain containing protein, expressed K16283: E3 ubiquitin-protein ligase SDIR1
15 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
16 Sobic.005G187500 GRF-interacting factor 2, putative, expressed -
17 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
18 Sobic.001G448200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
19 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
20 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -


Gene co-expression network
sample Sobic003G247900 Sobic003G247900 Sobic003G038600 Sobic003G038600 Sobic003G247900--Sobic003G038600 Sobic010G219100 Sobic010G219100 Sobic003G247900--Sobic010G219100 Sobic001G507400 Sobic001G507400 Sobic003G247900--Sobic001G507400 Sobic008G111700 Sobic008G111700 Sobic003G247900--Sobic008G111700 Sobic001G285300 Sobic001G285300 Sobic003G247900--Sobic001G285300 Sobic001G532100 Sobic001G532100 Sobic003G247900--Sobic001G532100 Sobic002G272600 Sobic002G272600 Sobic003G247900--Sobic002G272600 Sobic006G094600 Sobic006G094600 Sobic003G247900--Sobic006G094600 Sobic002G077900 Sobic002G077900 Sobic003G247900--Sobic002G077900 Sobic003G038600--Sobic008G111700 Sobic007G111100 Sobic007G111100 Sobic003G038600--Sobic007G111100 Sobic010G017000 Sobic010G017000 Sobic003G038600--Sobic010G017000 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic009G258400 Sobic009G258400 Sobic003G038600--Sobic009G258400 Sobic003G038600--Sobic003G247900 Sobic003G005200 Sobic003G005200 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200 Sobic010G219100--Sobic002G272600 Sobic010G219100--Sobic003G247900 Sobic008G137600 Sobic008G137600 Sobic010G219100--Sobic008G137600 Sobic002G129000 Sobic002G129000 Sobic010G219100--Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic010G219100--Sobic006G183000 Sobic006G257001 Sobic006G257001 Sobic010G219100--Sobic006G257001 Sobic010G193800 Sobic010G193800 Sobic010G219100--Sobic010G193800 Sobic001G152000 Sobic001G152000 Sobic010G219100--Sobic001G152000 Sobic009G050700 Sobic009G050700 Sobic010G219100--Sobic009G050700 Sobic001G038100 Sobic001G038100 Sobic001G507400--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic001G507400--Sobic007G117100 Sobic007G191700 Sobic007G191700 Sobic001G507400--Sobic007G191700 Sobic006G120800 Sobic006G120800 Sobic001G507400--Sobic006G120800 Sobic001G507400--Sobic009G258400 Sobic002G014700 Sobic002G014700 Sobic001G507400--Sobic002G014700 Sobic003G420700 Sobic003G420700 Sobic001G507400--Sobic003G420700 Sobic002G204000 Sobic002G204000 Sobic001G507400--Sobic002G204000 Sobic010G154000 Sobic010G154000 Sobic001G507400--Sobic010G154000 Sobic008G111700--Sobic001G285300 Sobic008G111700--Sobic003G038600 Sobic001G448200 Sobic001G448200 Sobic008G111700--Sobic001G448200 Sobic001G349400 Sobic001G349400 Sobic008G111700--Sobic001G349400 Sobic008G111700--Sobic003G247900 Sobic003G031200 Sobic003G031200 Sobic008G111700--Sobic003G031200 Sobic003G043400 Sobic003G043400 Sobic008G111700--Sobic003G043400 Sobic008G111700--Sobic006G094600 Sobic006G261100 Sobic006G261100 Sobic008G111700--Sobic006G261100 Sobic001G285300--Sobic008G111700 Sobic001G285300--Sobic001G532100 Sobic006G143500 Sobic006G143500 Sobic001G285300--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic001G285300--Sobic002G044000 Sobic001G036700 Sobic001G036700 Sobic001G285300--Sobic001G036700 Sobic001G126200 Sobic001G126200 Sobic001G285300--Sobic001G126200 Sobic001G285300--Sobic003G420700 Sobic001G402300 Sobic001G402300 Sobic001G285300--Sobic001G402300 Sobic001G285300--Sobic006G094600 Sobic001G532100--Sobic008G137600 Sobic001G532100--Sobic001G036700 Sobic001G532100--Sobic010G193800 Sobic001G532100--Sobic001G285300 Sobic001G294900 Sobic001G294900 Sobic001G532100--Sobic001G294900 Sobic007G152400 Sobic007G152400 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400 Sobic001G061700 Sobic001G061700 Sobic002G272600--Sobic001G061700 Sobic001G080000 Sobic001G080000 Sobic002G272600--Sobic001G080000 Sobic001G143500 Sobic001G143500 Sobic002G272600--Sobic001G143500 Sobic003G405700 Sobic003G405700 Sobic002G272600--Sobic003G405700 Sobic010G105600 Sobic010G105600 Sobic002G272600--Sobic010G105600 Sobic007G205000 Sobic007G205000 Sobic002G272600--Sobic007G205000 Sobic002G272600--Sobic003G038600 Sobic003G350600 Sobic003G350600 Sobic002G272600--Sobic003G350600 Sobic002G272600--Sobic010G219100 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic003G131300 Sobic003G131300 Sobic006G094600--Sobic003G131300 Sobic006G094600--Sobic001G294900 Sobic006G094600--Sobic001G126200 Sobic006G094600--Sobic006G183000 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic001G168900 Sobic001G168900 Sobic002G077900--Sobic001G168900 Sobic001G226000 Sobic001G226000 Sobic002G077900--Sobic001G226000 Sobic001G370300 Sobic001G370300 Sobic002G077900--Sobic001G370300 Sobic002G077900--Sobic003G420700 Sobic004G307500 Sobic004G307500 Sobic002G077900--Sobic004G307500 Sobic009G058500 Sobic009G058500 Sobic002G077900--Sobic009G058500 Sobic002G077900--Sobic009G258400 Sobic006G044600 Sobic006G044600 Sobic002G077900--Sobic006G044600 Sobic002G077900--Sobic010G193800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.